Transcript Information: R_Transcript_28984.p1


Annotated TAIR IDAT1G57820.1
Annotated Gene NameZinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)VIM1, ORTH2
Annotation TypeOrtholog
Chromosome Positionchr1:21414342-21417902 | Reverse length=645
E-Value1.6E-284
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 157.049450513376
Replicate 237.573771594656
Replicate 342.87901730417
Condition 2: 8 Hour
Replicate 143.53042657288
Replicate 244.926373058696
Replicate 359.556264911335
Condition 3: 24 Hour
Replicate 174.755421966289
Replicate 259.044666938434
Replicate 367.723133325341


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28984.p1 GENE.R_Transcript_28984~~R_Transcript_28984.p1 ORF type:complete len:765 (+),score=209.88,SAD_SRA|PF02182.13|1e-47,SAD_SRA|PF02182.13|2.4e+03,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e-07,zf-C3HC4|PF00097.21|5.8e-05,zf-RING_2|PF13639.2|49,zf-RING_2|PF13639.2|6.8e-05,zf-RING_2|PF13639.2|0.00016,zf-C3HC4_4|PF15227.2|1.4e+03,zf-C3HC4_4|PF15227.2|7.4e+03,zf-C3HC4_4|PF15227.2|1.3e-05,zf-C3HC4_4|PF15227.2|9.9e-05,zf-C3HC4_4|PF15227.2|3.2e+03,zf-RING_UBOX|PF13445.2|3.8e+03,zf-RING_UBOX|PF13445.2|0.0036,zf-RING_UBOX|PF13445.2|6.1e-05,zf-C3HC4_2|PF13923.2|1.4e+04,zf-C3HC4_2|PF13923.2|1.5e-05,zf-C3HC4_2|PF13923.2|0.00014,zf-C3HC4_3|PF13920.2|8.6e+02,zf-C3HC4_3|PF13920.2|1e-07,zf-C3HC4_3|PF13920.2|0.33,zf-RING_5|PF14634.2|6.2e+03,zf-RING_5|PF14634.2|4.7e-05,zf-RING_5|PF14634.2|0.00024 R_Transcript_28984:276-2570(+)
ATGGCGGAACTGCCGTGCGACGGGGAGGGGAAGTGCATGAAGTGTTCGAAGAAGCCAACGGAGGGGGAGAAGCTTGTGTGCAAGACGTGCGTCACACCGTGGCATGTCGAGTGCCTTGCGTCTCCTCCTCAGTCCATGTCATTGGTCCGCCAATGGGAGTGCCCTGACTGCTCCGACGTCACCCCCGCCGCTGGTGGCGTCATTGTCAAGTCATCGTCGGTGCCGGCGAGCGACCTGGTGGCCAAGATCAGGGAGATCGAGAATGACGAGACGCTTACGGAGCAGCAGAAGGCCAAGAAGAGACAGTGCCTCATGAGTGGAAAGAATGGTGATGAGTATGATATGGAGGAGGAGAAAGTCAAGGATGATAACGAGATTCTTGAGATTTTGGGAGATAACATCAAGTGCTCCTTCTGTATGCAGCTTCCTCAACGCCCTGTCACTACTCCATGTGGGCACAACTTCTGCTTGAGGTGTTTCGAGAAATGGGTGGGGCAGGGAAAGCAGACGTGTGCCAAGTGCAGGAAAGTTATTCCTGACAAAATGCGTATCCTTCCTAGAATCAACGCGTCTCTTGTTTTGGCAATCAGGATGGCCAGGGTACCAAGCACTACTAAAGTTGCAGCTCCTAGAGTCATTCAGTTTGTGCACAATGAGGATCTGCCTGAAAAGGCATTCACCACTGGCAATGCTAAAAAGTCAGGCAATGCAAATGCCAAAAGTGGAAGAATCTTCGTCACTATCCCGAATGATTATCTTGGACCTATAACTGAAGAGTATGATCCCATTAAGAAAATGGGTGTGCTTGTTGGTGACAGTTGGGAAGATAGGTTGGCATGCAGACAGTGGGGTGCTCACTTCCCGCATGTTGCTGGTATAGCTGGACAAGCAAAATATGCTGCACAATCAGTGGTTCTTTCTGGAGGCTATGAAGATGATGAGGATCATGGAGAGTGGTTCCTTTATACAGGAAGTGGTGGTCGGGACTTAAGTGGAAACAAGCGCACAAACAAGGAACAGACATCTGACCAAAAATTTACCCTTGGGAATGAGGCACTGCGTCAAAGTTGTAGAAAAGGCTATCCTGTTCGTGTTGTAAGATCCTTCAAAGAGAAGCGTTCTAACTATGCTCCCGAAACTGGTGTGCGTTATGATGGTGTTTACAGAATTGAGAAGTGTTGGAGGAAGCCTGGAAAACAGATATTTAAGGTCTGTCGGTACCTATTTGTCAGATGTGATAACAGTCCTGCACCATGGACAAGTGATGAGCATGGTGATCGACCAAGACCATTACCAAAAGTTCCAGAGCTTAAATTTGCTACGGACTTGACAGAAAGAAAGGAAAGTCCTCACTGGGACTTTGATGAAAAAGAAGGCTGTTGGAAATGGGTGAAGCTTCCACCACCTAGTAGTGCGACTAAGGGAGGAAAAGGGAAAGGAGCTTCTCGTCCTAGGAAAAACTCGAAGGCTAAAATTTTGAAGGAATTTAGCTGTCTCATATGTCACAAGGTTTTGACTCTTCCTGTAACGACTCCTTGTGCACACAATTTCTGCAAATCTTGCCTTGATGGGGCGTTTAAGGGTCAAAGTTTTGTAAGAGAGAGAAATACTGGTGGAAGGCAACTTCGGACACAGAAAACTGCCATGAAATGCCCCTCATGCACCATGAACATCTCTGAATTTCTTCAAAATGTCCAGGTTAATAGGGAGCTAATGGGGGTGATAGAGTCCCTGATGCGCAAGTTTGACGAGGAGGAGAAAGCAGAAGCTGCAGTTGAGGAAGAAAGTTCTGGCAATGTTGAAGATGAGGAGGAAGAGGACCCTGATGAAGAGGAAGAAGACCCTGATGAAGAGGTGGCTGAGGATGATGAGGTTGTGGGCGCTGAAAATGAACTCTTAGAATCTGATGGAATTGAAAGCAAACCAGTTGAGGTGGTTGCTGACATGTCAATCAAGAAATCTGAAGGCGAGAATGGTAATGCCAGTGAAGCTGTCAAGGATTCAGATGGTGGAGACAAGCCTGACCCTTCTGCTGTTCCTGCCAAACGAGGACGTAAGAGGAAAAATGTCACTGCTGAGAAACCAAGCGGCAAGAATGATGCAGACAAGCCAGACCCTTCTGTTCCTGCCAAACGAGGTCGTAAGAGAAAAAATGATGGTGTCACTGCTGGTGCTGGTGCTGGCGCTGGCGCTGCAAGAAGAACAAGAGGCAGGAAAGGCCAGACAGTTGCTGATGATGGAAATGTTTCCCCATCCAGTCCTCTTCATGTGCTCTCGGAAAATGAGCTTGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28984.p1 GENE.R_Transcript_28984~~R_Transcript_28984.p1 ORF type:complete len:765 (+),score=209.88,SAD_SRA|PF02182.13|1e-47,SAD_SRA|PF02182.13|2.4e+03,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e-07,zf-C3HC4|PF00097.21|5.8e-05,zf-RING_2|PF13639.2|49,zf-RING_2|PF13639.2|6.8e-05,zf-RING_2|PF13639.2|0.00016,zf-C3HC4_4|PF15227.2|1.4e+03,zf-C3HC4_4|PF15227.2|7.4e+03,zf-C3HC4_4|PF15227.2|1.3e-05,zf-C3HC4_4|PF15227.2|9.9e-05,zf-C3HC4_4|PF15227.2|3.2e+03,zf-RING_UBOX|PF13445.2|3.8e+03,zf-RING_UBOX|PF13445.2|0.0036,zf-RING_UBOX|PF13445.2|6.1e-05,zf-C3HC4_2|PF13923.2|1.4e+04,zf-C3HC4_2|PF13923.2|1.5e-05,zf-C3HC4_2|PF13923.2|0.00014,zf-C3HC4_3|PF13920.2|8.6e+02,zf-C3HC4_3|PF13920.2|1e-07,zf-C3HC4_3|PF13920.2|0.33,zf-RING_5|PF14634.2|6.2e+03,zf-RING_5|PF14634.2|4.7e-05,zf-RING_5|PF14634.2|0.00024 R_Transcript_28984:276-2570(+)
MAELPCDGEGKCMKCSKKPTEGEKLVCKTCVTPWHVECLASPPQSMSLVRQWECPDCSDVTPAAGGVIVKSSSVPASDLVAKIREIENDETLTEQQKAKKRQCLMSGKNGDEYDMEEEKVKDDNEILEILGDNIKCSFCMQLPQRPVTTPCGHNFCLRCFEKWVGQGKQTCAKCRKVIPDKMRILPRINASLVLAIRMARVPSTTKVAAPRVIQFVHNEDLPEKAFTTGNAKKSGNANAKSGRIFVTIPNDYLGPITEEYDPIKKMGVLVGDSWEDRLACRQWGAHFPHVAGIAGQAKYAAQSVVLSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQTSDQKFTLGNEALRQSCRKGYPVRVVRSFKEKRSNYAPETGVRYDGVYRIEKCWRKPGKQIFKVCRYLFVRCDNSPAPWTSDEHGDRPRPLPKVPELKFATDLTERKESPHWDFDEKEGCWKWVKLPPPSSATKGGKGKGASRPRKNSKAKILKEFSCLICHKVLTLPVTTPCAHNFCKSCLDGAFKGQSFVRERNTGGRQLRTQKTAMKCPSCTMNISEFLQNVQVNRELMGVIESLMRKFDEEEKAEAAVEEESSGNVEDEEEEDPDEEEEDPDEEVAEDDEVVGAENELLESDGIESKPVEVVADMSIKKSEGENGNASEAVKDSDGGDKPDPSAVPAKRGRKRKNVTAEKPSGKNDADKPDPSVPAKRGRKRKNDGVTAGAGAGAGAARRTRGRKGQTVADDGNVSPSSPLHVLSENELE*

Click here to download the sequence:
Link to NCBI Protein BLAST