Transcript Information: R_Transcript_29002.p1


Annotated TAIR IDAT5G04040.1
Annotated Gene NamePatatin-like phospholipase family protein
Annotated Gene Symbol(s)SDP1
Annotation TypeOrtholog
Chromosome Positionchr5:1090346-1093003 | Forward length=825
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.661776258597
Replicate 24.5132234539706
Replicate 37.3590570548387
Condition 2: 8 Hour
Replicate 15.6923915005862
Replicate 28.8816586752373
Replicate 39.8603959561682
Condition 3: 24 Hour
Replicate 17.6168425848925
Replicate 24.5089606376764
Replicate 36.7248438465584


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_29002.p1 GENE.R_Transcript_29002~~R_Transcript_29002.p1 ORF type:complete len:856 (+),score=181.74,DUF3336|PF11815.4|7.6e-28,Patatin|PF01734.18|1.1e+03,Patatin|PF01734.18|1.3e-15 R_Transcript_29002:289-2856(+)
ATGGATATAAGTAATGAAGCAACAGTTGATTCATTCTCAATTGGACCAACATCTATTGTTGGTAGAACAATTGCCTTTAGGATACTATTTTGCAAGTCTATGACACATTTTAGACATCAATTGGCAATTGTATTGGTGAAGTCAATTAGAGGGTTTACAGATTATGTAGCCCCTGTGTTTTCATGGTTTCATCCTCGAAACCCTCAGGGGATATTGGCAATGGTAACCATTATAGCTTTCGTGTTGAAACGATACACAAATTTCAAAATGAGGGCTGAGATGGCTTATAGGAGGAAATTTTGGCGAAATATGATGAGGTCCGCCTTGACTTATGAGGAATGGGCTCATGCTGCTAAGATGTTGGAAAAGGAAAGTCCGAAAATGAATGAAGGCGAGTTTTATGATGAGGAGCTTATGAGGAATAAGCTCCAAGAGTTGAGGCATCGTCGCCAAGAAGGATCATTGAGAGACATTATATTTTGTATGAGAGCGGATCTTATTAGAAATCTTGGGAATATGTGTAATCCTGAGCTTCATAAGGGGAGGCTTCAAGTGCCTAAACTCATAAAAGAGTACATCGATGAAGTCACCACTCAGTTGAGGATGGTTTGTGATTCGGATTCCGAAGAGCTCTTGTTGGAAGAGAAGCTTGCTTTTATGCATGAGACGAGACATGCTTTCGGGAGGACGGCTTTGCTTTTGAGTGGTGGTGCTTCTCTTGGATCGTTCCATGTTGGTGTTGTTAAAACATTGGTAGATCATAAACTTTTGCCTAGGATCATTGCTGGTTCTAGTGTAGGATCGATTATGTGTGCTGTCGTTGCTACTAGGTCTTGGCCTGAGCTTCAGAGTTTCTTTGAGGATTCCTGGCATTCTCTGAAGTTTTTTGACCAGATTGGTGGGATTTTTACAGTTGTTAAGAGGGTCATGACATTTGGTGCTGTTCATGAGATTAGGCAGCTGCAAATGATGTTGAGGAATCTCACAAGCAATCTGACTTTCCAGGAGGCTTATGACATGACTGGCAGAATTCTTGGCATAACAGTCTGCTCTCCTAGGAAACACGAGCCTCCTCGTTGCCTTAACTACTTGACTTCCCCCCACGTTGTTATATGGAGTGCAGTGACAGCTTCTTGTGCCTTTCCTGGCCTCTTCGAGGCTCAGGAGCTCATGGCTAAAGATAGAACTGGTGAACTTGTACCTTACCATCCACCTTTTCATCTTGGTCCTGAGGAAGGTGTGACCCCATCACGTCGGTGGAGAGATGGTAGCTTGGAGAGTGATTTGCCAATGATGCAGTTAAAGGAGCTTTTCAATGTCAATCATTTCATTGTAAGTCAGGCAAACCCTCATATCTCACCTTTATTGAGGCTGAAGGACTTTGTCAGAGCATATGGAGGCAACTTTGCAGCTAAGCTTGCTCAATTGGCTGAGATGGAGGTGAAACACAGGTGTAACCAGATACTGGAACTGGGTTTTCCATTGGGTGGAGTTGCCAAATTGTTTGCTCAGGCATGGGAGGGTGATGTCACAGTAGTGATGCCCGCTACACTTGCTCAGTACTCAAAAATTATTCAGAACCCATCTTATGGCGAGCTCCAGAAGGCTGCAAACCAAGGTAGAAGGTGCACCTGGGAAAAGCTTTCTGCTATAAAAGCCAACTGTGGTATTGAGCTCGCATTGGATGAGTGTGTTGCGATTCTCAACCATATGCGTAGATTGAAACGGAGTGCTCAGAGAGCTGCTGCAGCTGCAGCTGCTTCTCAAAATCAGACGCAGACCCTATCTAGCACAGTACGATTTAACGCTTCACGAAGGATTCCATCATGGAACTGCATTGCCCGAGAAAACTCCACTGGATCTCTTGATGATGAAATGCTTGCTGATGTGGCTTCCTTTCAGCAAGTTACTAGCCCAGTTGGTGCATCCTCGAGCCGACATCACCGGACTGGGCGGAACATGTTTGACGGCAGTGATAGTGAATCCGAGGGTTTTGATTTGAACACGTGGACAAGAACTGGTGGACCCCTGATGAGGACTACGTCTGCAAACAAGTTTGTTGATTTTGTTCAGAGTTTAGAGATGGATGTTGAAATGAAGCAAAATTTGACAGGTCACCTGAACTCTGTTGTGATGCAAACAGTGGCCAGGGACTCGAGGGTGCCAACACCTGACCGATGCTCGGAGAACGCTGAATTTGATCAGAGGGATTCTGGTAGCCGAGGGAGTATGAGCAATGCTAGCATTAGGGTTACTGAAGGTGACCTTTTGCAGCCGGAGAGAATACACAATGGGATAGTGTTGAACGTTGTCAAGAAGGAAGACCTCACAGCTTCAGCTCGAAGTAATGATTCAGAGAGCTTCAACAGCATTCCAAGCTCAGAGGCTGAGTGTGTGCAACTTGAATGCCCAGAACAGGAGACTGATATCAGCTCATCATCAGAACACAGCGATGAGGATGAAAAGAACCGCCTCAACGAAGTTCATTCTCATTCTAAACCAGTTGACCATCCCGGCGTGGAAAATAGAACTGGTCCCTCCACTTCAGATGCTGTTTCTGATACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_29002.p1 GENE.R_Transcript_29002~~R_Transcript_29002.p1 ORF type:complete len:856 (+),score=181.74,DUF3336|PF11815.4|7.6e-28,Patatin|PF01734.18|1.1e+03,Patatin|PF01734.18|1.3e-15 R_Transcript_29002:289-2856(+)
MDISNEATVDSFSIGPTSIVGRTIAFRILFCKSMTHFRHQLAIVLVKSIRGFTDYVAPVFSWFHPRNPQGILAMVTIIAFVLKRYTNFKMRAEMAYRRKFWRNMMRSALTYEEWAHAAKMLEKESPKMNEGEFYDEELMRNKLQELRHRRQEGSLRDIIFCMRADLIRNLGNMCNPELHKGRLQVPKLIKEYIDEVTTQLRMVCDSDSEELLLEEKLAFMHETRHAFGRTALLLSGGASLGSFHVGVVKTLVDHKLLPRIIAGSSVGSIMCAVVATRSWPELQSFFEDSWHSLKFFDQIGGIFTVVKRVMTFGAVHEIRQLQMMLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRTGELVPYHPPFHLGPEEGVTPSRRWRDGSLESDLPMMQLKELFNVNHFIVSQANPHISPLLRLKDFVRAYGGNFAAKLAQLAEMEVKHRCNQILELGFPLGGVAKLFAQAWEGDVTVVMPATLAQYSKIIQNPSYGELQKAANQGRRCTWEKLSAIKANCGIELALDECVAILNHMRRLKRSAQRAAAAAAASQNQTQTLSSTVRFNASRRIPSWNCIARENSTGSLDDEMLADVASFQQVTSPVGASSSRHHRTGRNMFDGSDSESEGFDLNTWTRTGGPLMRTTSANKFVDFVQSLEMDVEMKQNLTGHLNSVVMQTVARDSRVPTPDRCSENAEFDQRDSGSRGSMSNASIRVTEGDLLQPERIHNGIVLNVVKKEDLTASARSNDSESFNSIPSSEAECVQLECPEQETDISSSSEHSDEDEKNRLNEVHSHSKPVDHPGVENRTGPSTSDAVSDT*

Click here to download the sequence:
Link to NCBI Protein BLAST