Transcript Information: R_Transcript_29046.p1


Annotated TAIR IDAT5G60960.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24528423-24529988 | Reverse length=521
E-Value9.6E-193
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 135.947513926119
Replicate 227.178767460485
Replicate 328.863365345821
Condition 2: 8 Hour
Replicate 128.371767032563
Replicate 226.33709983589
Replicate 335.504966854026
Condition 3: 24 Hour
Replicate 144.510930265568
Replicate 238.164453720789
Replicate 344.193912331479


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_29046.p1 GENE.R_Transcript_29046~~R_Transcript_29046.p1 ORF type:complete len:523 (+),score=130.30,PPR_2|PF13041.2|4.3e+03,PPR_2|PF13041.2|8.9,PPR_2|PF13041.2|2.3e+02,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|5.6e-06,PPR_2|PF13041.2|5e-09,PPR_2|PF13041.2|5.4e+03,PPR_2|PF13041.2|5.3e-08,PPR_2|PF13041.2|3.5,PPR|PF01535.16|10,PPR|PF01535.16|5.1e+02,PPR|PF01535.16|0.055,PPR|PF01535.16|9.8e+02,PPR|PF01535.16|8.3e+02,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|23,PPR|PF01535.16|0.23,PPR|PF01535.16|0.68,PPR_1|PF12854.3|25,PPR_1|PF12854.3|84,PPR_1|PF12854.3|2.5e-05,PPR_1|PF12854.3|5.6e+02,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|3.7e+02,PPR_1|PF12854.3|87,PPR_1|PF12854.3|2.9,PPR_3|PF13812.2|78,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|12,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|0.066,PPR_3|PF13812.2|35,PPR_3|PF13812.2|8.4 R_Transcript_29046:100-1668(+)
ATGCTGAGAGCTTCTTCCTCTCTCCGCCGCTTGCTCCTCCTCCGCCACCACCACTTCTATTCCACCACCACCATCACCACCTCTTCTCCACCACCAACACTCTCTTCTTTCACCTCCCTTAAACCCCATTTCTTCTCATCCCCAAAACCCCACTTTTCCCAAACCCTTTTCTCCCATTCCTTCTGTTCAAAACCCCATCAAGAAAATGACACCCAAATTGCCCAATATCTCTCTTATGAACTTCTCAAACCCCCCTCATCAAACTCTCAATCTGAAACCCTTTCCCTTTCTCAAAGACTTGACCTTTCTTTCTCCCATGTAACTCTAACCCCACCTCTAATTCTCCATACCCTTAACCTCTCTCCTGATGCTGGGCGCTCTGTGCTTGATTTCCTCAACTGGGTTTCCTCCGAAACCCCAAAAAGATTGGATCTTGATGATCAGGTATACTCTTACTTTCTCGATTATTTTGGCCGTAGGAAGGATTTCAAAGTTGCCCATGATGTTCTTGTTCTTGGTAAAGGTGTTCTTGAGGAGAAATCTTTTCTTGTGTTTGTGGATAGGCTTGTTAGGGCTGGTAGACCTGCTCAAGCTGTCACCTTCTTTGAGAATATGGAGAAAGATTATGGCATTGTTAGGACTAAGGAAAGGTTGAATTTTGTTGTTAATAGGCTTTGTGAAAATGGGTATGCTAATTATGCTGAGAAGATCGTTAAGAGTCTTGCTAATGAGTTTTTCCCTGATGAGTATGTTTGTGATATGTTGATTAAAGGGTGGTGTGTTGATGGGAAGCTCGAGGAGGCGAGACGGTTGGCTAGGGAGATGTATAGGGGAGGGTTTGAGACCGGGACGGCAGCGTATAATGCCATTCTTGATTGTGTGTGTAGGCTTTGTAGGAAGGACCCTTTTCGGCTTTGGTCGGAGGCTGAGAATGTGTTAGTTGATATGGATGCGGCAGGTGTGCCTCGGGATACCGAGACCTTCAATGTGTTGATTACGAATTTGTGTAAGCTTCGTATGACCGAGGAGGCTTTGAAGTTGTTCTTTAGGATGGGTGAGTGGGTGTGTTCTCCTGATGCCACAACGTTTCTTGTTTTGACTAGGAGCTTGTATCAGGCAGCTAGGGTCGGGGAGGGCGACGAGATGATTGATAGGATGAAGTCTGCAGGGTTCGGGGATGCTCTTGATAAGAAGGCTTATTATGAGTTTTTGAAGATCCTTTGTGGGATTGAAAGGGTTGATCATGCTTTGAGTATCTTTGCAAAGATGAAGAAGGATGGTTGTAAACCTGGGGAGAAGACTTATGAGCTATTGATAAAGAAGTTGTATGCTCACGGTCGTGTGGAGAGAGCAAAGAGTCTTTACAATGAAGCTGCCCAAAATGGGCTGTCAGTTGAGGCTAAGGTTTACCCGTTGGATCCGAGATTTGTGAAGAAGCCCACTGTTGTGAAGAAGGGGAAGAAGCGGCTGACATTGCCTGAGAAAATGGCATTGAAAAGAAAACGGCTCAGGAAGATTAATTTGAGTTTTGTGAAGAAGCCAAGGAATATGATGCGACGAGCACTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_29046.p1 GENE.R_Transcript_29046~~R_Transcript_29046.p1 ORF type:complete len:523 (+),score=130.30,PPR_2|PF13041.2|4.3e+03,PPR_2|PF13041.2|8.9,PPR_2|PF13041.2|2.3e+02,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|5.6e-06,PPR_2|PF13041.2|5e-09,PPR_2|PF13041.2|5.4e+03,PPR_2|PF13041.2|5.3e-08,PPR_2|PF13041.2|3.5,PPR|PF01535.16|10,PPR|PF01535.16|5.1e+02,PPR|PF01535.16|0.055,PPR|PF01535.16|9.8e+02,PPR|PF01535.16|8.3e+02,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|23,PPR|PF01535.16|0.23,PPR|PF01535.16|0.68,PPR_1|PF12854.3|25,PPR_1|PF12854.3|84,PPR_1|PF12854.3|2.5e-05,PPR_1|PF12854.3|5.6e+02,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|3.7e+02,PPR_1|PF12854.3|87,PPR_1|PF12854.3|2.9,PPR_3|PF13812.2|78,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|12,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|0.066,PPR_3|PF13812.2|35,PPR_3|PF13812.2|8.4 R_Transcript_29046:100-1668(+)
MLRASSSLRRLLLLRHHHFYSTTTITTSSPPPTLSSFTSLKPHFFSSPKPHFSQTLFSHSFCSKPHQENDTQIAQYLSYELLKPPSSNSQSETLSLSQRLDLSFSHVTLTPPLILHTLNLSPDAGRSVLDFLNWVSSETPKRLDLDDQVYSYFLDYFGRRKDFKVAHDVLVLGKGVLEEKSFLVFVDRLVRAGRPAQAVTFFENMEKDYGIVRTKERLNFVVNRLCENGYANYAEKIVKSLANEFFPDEYVCDMLIKGWCVDGKLEEARRLAREMYRGGFETGTAAYNAILDCVCRLCRKDPFRLWSEAENVLVDMDAAGVPRDTETFNVLITNLCKLRMTEEALKLFFRMGEWVCSPDATTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGDALDKKAYYEFLKILCGIERVDHALSIFAKMKKDGCKPGEKTYELLIKKLYAHGRVERAKSLYNEAAQNGLSVEAKVYPLDPRFVKKPTVVKKGKKRLTLPEKMALKRKRLRKINLSFVKKPRNMMRRAL*

Click here to download the sequence:
Link to NCBI Protein BLAST