Transcript Information: R_Transcript_290505.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value2E-51
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.54370521992779
Replicate 20.53607575530974
Replicate 30.29242643739769
Condition 2: 8 Hour
Replicate 10.31258550996483
Replicate 20
Replicate 30.30896358502786
Condition 3: 24 Hour
Replicate 10.19538559342727
Replicate 20
Replicate 30.37255667552166


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_290505.p1 GENE.R_Transcript_290505~~R_Transcript_290505.p1 ORF type:5prime_partial len:235 (+),score=4.38,PIF1|PF05970.10|2.2e-38,Herpes_Helicase|PF02689.10|8.9e-06 R_Transcript_290505:3-707(+)
AATACCTATCCAAACCTCCGAGACAAGTTGAACGATTCTATTTACTTTCAGGAAAGGGCAATATTAGGACCGACTAATGAAGTCGTTGAAGATATCAACTCCTATATGTTGTCCTTATTGCCGGGAGATGAAAGAGTATATAAAAGTTCTGATTCAATTTGTCCTGATGATGTCCAGAAGTTTACTCACGATCAGGTATATTCAACCAAATACCTCAATAGTTTAAGGTGTTCTGGTTTACCTAACCATGAACTTTCACTTAAAGTAAGTGCTCCAATAATGCTTCTTAGAAATATTGATTGCTCTGGTGGTTTATGTAACGGTACACGATTACGTATAACCAAGTTGGGTAACAATGTTATCGAAGCAGAGGTTCTCACTGGTAGTAGAATTGGAAACAAGGTCTTCATACCACGGTTTTCACTGACACTATCTGATACACATCTGCCGTTCAGATTTAGTAGGTGCCAATTCCCAATCAGAATTTGCTTTGCTATGACGATCAACAAAAGTCAGGGACAATCTCTTCAATGGGTTGGTGTGTATTTACCTACACCAGTATTCACGCATGGTCAACTTTATGTTGCCATATCACGAGTGACCAATAGAGAAGGCCTTAAGTTTCTTATATTAGATGATAATGGGAAGCCATGTAATAAAACTCTAAATGTAGTGTGTAAAGAGGTTTTGAAAAATATTTGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_290505.p1 GENE.R_Transcript_290505~~R_Transcript_290505.p1 ORF type:5prime_partial len:235 (+),score=4.38,PIF1|PF05970.10|2.2e-38,Herpes_Helicase|PF02689.10|8.9e-06 R_Transcript_290505:3-707(+)
NTYPNLRDKLNDSIYFQERAILGPTNEVVEDINSYMLSLLPGDERVYKSSDSICPDDVQKFTHDQVYSTKYLNSLRCSGLPNHELSLKVSAPIMLLRNIDCSGGLCNGTRLRITKLGNNVIEAEVLTGSRIGNKVFIPRFSLTLSDTHLPFRFSRCQFPIRICFAMTINKSQGQSLQWVGVYLPTPVFTHGQLYVAISRVTNREGLKFLILDDNGKPCNKTLNVVCKEVLKNIC*

Click here to download the sequence:
Link to NCBI Protein BLAST