Transcript Information: R_Transcript_29051.p1


Annotated TAIR IDAT3G54980.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20370293-20372848 | Forward length=851
E-Value9.1E-188
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.7094979386374
Replicate 22.5235938000358
Replicate 34.4051418454139
Condition 2: 8 Hour
Replicate 14.0417373230228
Replicate 23.6551441471169
Replicate 36.1959824713821
Condition 3: 24 Hour
Replicate 15.7762431646627
Replicate 24.6301905683744
Replicate 36.8048312648367


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_29051.p1 GENE.R_Transcript_29051~~R_Transcript_29051.p1 ORF type:complete len:624 (+),score=117.77,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|0.00012,PPR_2|PF13041.2|4.9e-10,PPR_2|PF13041.2|3.7e-10,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|5.2e-13,PPR_2|PF13041.2|2.2e-14,PPR_2|PF13041.2|4.5e-16,PPR_2|PF13041.2|7.3e-05,PPR_2|PF13041.2|1e-15,PPR_2|PF13041.2|5.2e-17,PPR_2|PF13041.2|1.5e-14,PPR_2|PF13041.2|2.9e-12,PPR_2|PF13041.2|2.1e-15,PPR_2|PF13041.2|4.5e-10,PPR_2|PF13041.2|2.8e-14,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|2.7,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|2.7e-08,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|2.9e-09,PPR_1|PF12854.3|0.0068,PPR_1|PF12854.3|0.0009,PPR_1|PF12854.3|4e-12,PPR_1|PF12854.3|1.8e-08,PPR_1|PF12854.3|0.00032,PPR_1|PF12854.3|2.3e-05,PPR_1|PF12854.3|2.5e-12,PPR_1|PF12854.3|1.7e-08,PPR_1|PF12854.3|2.3e+02,PPR|PF01535.16|0.0054,PPR|PF01535.16|0.3,PPR|PF01535.16|0.00028,PPR|PF01535.16|5.1e-08,PPR|PF01535.16|0.0061,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|6.5e-07,PPR|PF01535.16|0.058,PPR|PF01535.16|0.0013,PPR|PF01535.16|4.4e-07,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|0.00013,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|1.2e-08,PPR|PF01535.16|1.9e-08,PPR_3|PF13812.2|0.0038,PPR_3|PF13812.2|8.7,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|26,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.59,PPR_3|PF13812.2|0.0001,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|0.00016,PPR_3|PF13812.2|0.00067,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|0.00094,PPR_3|PF13812.2|3.4e-06,PPR_3|PF13812.2|0.0031,MRP-S27|PF10037.5|2.9,MRP-S27|PF10037.5|9.1,MRP-S27|PF10037.5|0.058,MRP-S27|PF10037.5|0.015,MRP-S27|PF10037.5|0.025,MRP-S27|PF10037.5|1.7,TPR_11|PF13414.2|8.5e+02,TPR_11|PF13414.2|1e+03,TPR_11|PF13414.2|0.099,TPR_11|PF13414.2|82,TPR_11|PF13414.2|1.1e+04,TPR_11|PF13414.2|0.2,TPR_11|PF13414.2|2.1e+02,TPR_11|PF13414.2|47,ATP13|PF12921.3|63,ATP13|PF12921.3|1.5e+02,ATP13|PF12921.3|9.1e+02,ATP13|PF12921.3|45,ATP13|PF12921.3|17,ATP13|PF12921.3|4e+02,ATP13|PF12921.3|27 R_Transcript_29051:255-2126(+)
ATGTCCATGGCTTGCTCGTCAATTCGAGTATGCCGGCGTTTCTGTACGTTTCGGGCCGTTTCATGTATCCGAGAGCGAAACCCCACTGGGTTGACTGGGGAAATAGATGCAGTTTCATATAGTTATGCTATTGAAGGTTCTAGTAGGAAGGGCGATTCGAAAGCAGCTTGTGAGCTTTTAATGGAGATGAGGGAGAAGGGTTTGGCGCCCTCTGAGAGTGCCTTCACTAGTGCCATTGTGGCATGTGCGAAGAAGAAGGATATGGCCCAAGCTTTGAGATTAAAGGATGAAATGATTTTGTGTGGAAGATCCATGAATTCGGTGGTCGCAAATAGTTTGATGAAGGGGTTTTGTGTATTAGGTGATATGGAGAGTGCTCTAGGTTTGTTTGAGAGGATCATTGCGGATGACAATAATGGATTATCTCTGAATAAGGCTACTTTCTCAGTGTTGATTGAAGGTTGTTGTAGAATGGGAAATATGGAAAAAGCATGTGAGCTTTATGACCATATGGTGAGGATGGGTATTGAACCTAGTATCTATAATGTTAATTCATTGATTAAAGGGTTTCTGAAAGCGGGATTGTGGGAAAATGCGTATGAGCAGTTTAACAAGGCTGTTGAAGCTGGTGTTGTCAATGTTTTTTCGTATAATTTTCTCATCTCATGGCTGTGTAGGGCTAACAAGGTGGTTGAAGCACGGAAGTTTTGGGATCAAATGGTTGAATCTGGGATTACCCCGAATATAGTCTCTTATAACCACCTTGTCCTTGGATATTGTAGGGTAGGGGATATTGTGATGGCGGATAGTATGTATTCTGACATGATTTGTAAGGGTTTTAAACCTAATGTTGTCAGCTTTACAATTCTGATGGATGGATACTTCAAGAAACGTGAGGTAGAGAAGGCCCTTCATTTATTTGATGATATGACTAGGCAAGGTATTGCTTGTACAGATTACACATATAATACAATCATTTGTCGGTTGTGCAAACTCAGGCAAACATCTCAGGCTTGGAAAATGCTGGAGAACTTCATAAAGGAAGACAAATTCAGGCCATCTTGCATGACTTACAATTTCATTATTGAAGGGTTTATGAAAGAAAGCTCCATTGATTCTGCATTGTTTGTGTACACTGAAATGAGAGAAAAAGGGGTCTCCCCAAATGTTGTAACTTGCACAATTTTGATTGATGGGTTTTGCAAAAGCAATAATATTGATCTTGCTTTGAAAGTTAGAAATGAGATGATAAGCAATGGTGTTAAATTGGATGTTATAGCATACAATGTGCTTATTGATGGGTTTTGCAAACGAAGGGAAATGGAAAGTGCATCGAGGCTTTTCTCTGAACTCCTTGAAACAGGGTTGTCTCCAAACATATTTGTTTACAATAGCATGATCAAGGGTTACATGAATCTAAACAACATGCAAGCTGCTCTTTCTTTTTATGATAAATTGATCCAACAAGGGATTTCTTGTGATGTGGAAACATACACTACTTTGATTGATGGACTATTGAAGGAAGGTAACTTGCTTGCTGCTTCAGATTTCTATTCTGAGATGCTAACAAAAGGGCTAACGCCTGATGAAATTACATATACAGCTTTGGTTAAGGGGTTATGTAAGAAAGGCCAATTGGAAAATGCATGGGAGTTCTTGAAAGAGATGGAGGAAAAGGGATTGACTCCTAACTCTCTTATATATAATGCACTGATTGCTGGTTATTTCAAGGAAGGAAATTTGCCCAAGGCCTTCAGCTTGTATGATGAAATGGTTGAGAGAGGTCATGCACCTGATAAAATGACCTTTGACTTTCTTATGAACGGGAACTTCAAAACGAGCAAGGATACCTTAAAGACTGCAGTGGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_29051.p1 GENE.R_Transcript_29051~~R_Transcript_29051.p1 ORF type:complete len:624 (+),score=117.77,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|0.00012,PPR_2|PF13041.2|4.9e-10,PPR_2|PF13041.2|3.7e-10,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|5.2e-13,PPR_2|PF13041.2|2.2e-14,PPR_2|PF13041.2|4.5e-16,PPR_2|PF13041.2|7.3e-05,PPR_2|PF13041.2|1e-15,PPR_2|PF13041.2|5.2e-17,PPR_2|PF13041.2|1.5e-14,PPR_2|PF13041.2|2.9e-12,PPR_2|PF13041.2|2.1e-15,PPR_2|PF13041.2|4.5e-10,PPR_2|PF13041.2|2.8e-14,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|2.7,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|2.7e-08,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|2.9e-09,PPR_1|PF12854.3|0.0068,PPR_1|PF12854.3|0.0009,PPR_1|PF12854.3|4e-12,PPR_1|PF12854.3|1.8e-08,PPR_1|PF12854.3|0.00032,PPR_1|PF12854.3|2.3e-05,PPR_1|PF12854.3|2.5e-12,PPR_1|PF12854.3|1.7e-08,PPR_1|PF12854.3|2.3e+02,PPR|PF01535.16|0.0054,PPR|PF01535.16|0.3,PPR|PF01535.16|0.00028,PPR|PF01535.16|5.1e-08,PPR|PF01535.16|0.0061,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|6.5e-07,PPR|PF01535.16|0.058,PPR|PF01535.16|0.0013,PPR|PF01535.16|4.4e-07,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|0.00013,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|1.2e-08,PPR|PF01535.16|1.9e-08,PPR_3|PF13812.2|0.0038,PPR_3|PF13812.2|8.7,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|26,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.59,PPR_3|PF13812.2|0.0001,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|0.00016,PPR_3|PF13812.2|0.00067,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|0.00094,PPR_3|PF13812.2|3.4e-06,PPR_3|PF13812.2|0.0031,MRP-S27|PF10037.5|2.9,MRP-S27|PF10037.5|9.1,MRP-S27|PF10037.5|0.058,MRP-S27|PF10037.5|0.015,MRP-S27|PF10037.5|0.025,MRP-S27|PF10037.5|1.7,TPR_11|PF13414.2|8.5e+02,TPR_11|PF13414.2|1e+03,TPR_11|PF13414.2|0.099,TPR_11|PF13414.2|82,TPR_11|PF13414.2|1.1e+04,TPR_11|PF13414.2|0.2,TPR_11|PF13414.2|2.1e+02,TPR_11|PF13414.2|47,ATP13|PF12921.3|63,ATP13|PF12921.3|1.5e+02,ATP13|PF12921.3|9.1e+02,ATP13|PF12921.3|45,ATP13|PF12921.3|17,ATP13|PF12921.3|4e+02,ATP13|PF12921.3|27 R_Transcript_29051:255-2126(+)
MSMACSSIRVCRRFCTFRAVSCIRERNPTGLTGEIDAVSYSYAIEGSSRKGDSKAACELLMEMREKGLAPSESAFTSAIVACAKKKDMAQALRLKDEMILCGRSMNSVVANSLMKGFCVLGDMESALGLFERIIADDNNGLSLNKATFSVLIEGCCRMGNMEKACELYDHMVRMGIEPSIYNVNSLIKGFLKAGLWENAYEQFNKAVEAGVVNVFSYNFLISWLCRANKVVEARKFWDQMVESGITPNIVSYNHLVLGYCRVGDIVMADSMYSDMICKGFKPNVVSFTILMDGYFKKREVEKALHLFDDMTRQGIACTDYTYNTIICRLCKLRQTSQAWKMLENFIKEDKFRPSCMTYNFIIEGFMKESSIDSALFVYTEMREKGVSPNVVTCTILIDGFCKSNNIDLALKVRNEMISNGVKLDVIAYNVLIDGFCKRREMESASRLFSELLETGLSPNIFVYNSMIKGYMNLNNMQAALSFYDKLIQQGISCDVETYTTLIDGLLKEGNLLAASDFYSEMLTKGLTPDEITYTALVKGLCKKGQLENAWEFLKEMEEKGLTPNSLIYNALIAGYFKEGNLPKAFSLYDEMVERGHAPDKMTFDFLMNGNFKTSKDTLKTAVA*

Click here to download the sequence:
Link to NCBI Protein BLAST