Transcript Information: R_Transcript_292101.p1


Annotated TAIR IDAT4G18750.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)DOT4
Annotation TypeOrtholog
Chromosome Positionchr4:10304850-10307465 | Forward length=871
E-Value9.1e-310
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.32511635288303
Replicate 20.21370280321932
Replicate 30.11657372822469
Condition 2: 8 Hour
Replicate 10.28037249939594
Replicate 20.11379583634191
Replicate 30.46187304377575
Condition 3: 24 Hour
Replicate 10.14604203071059
Replicate 20.42090188722476
Replicate 30.77971467078006


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_292101.p1 GENE.R_Transcript_292101~~R_Transcript_292101.p1 ORF type:5prime_partial len:786 (+),score=128.21,PPR|PF01535.16|11,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|0.00041,PPR|PF01535.16|84,PPR|PF01535.16|2.9e-06,PPR|PF01535.16|8.4e-08,PPR|PF01535.16|8.9e-05,PPR|PF01535.16|5.1e-06,PPR|PF01535.16|5.4,PPR|PF01535.16|0.001,PPR|PF01535.16|1.3e-08,PPR|PF01535.16|3.2,PPR|PF01535.16|0.0053,PPR|PF01535.16|5.4,PPR|PF01535.16|0.21,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|7.9e+03,PPR_2|PF13041.2|5.6,PPR_2|PF13041.2|9.9e+02,PPR_2|PF13041.2|3.8e-09,PPR_2|PF13041.2|1e-05,PPR_2|PF13041.2|9.6e-06,PPR_2|PF13041.2|0.00071,PPR_2|PF13041.2|1e-09,PPR_2|PF13041.2|0.0068,PPR_2|PF13041.2|9.4e-11,PPR_2|PF13041.2|63,PPR_2|PF13041.2|3.2e-05,PPR_2|PF13041.2|25,PPR_2|PF13041.2|0.47,PPR_2|PF13041.2|3.6e+02,PPR_1|PF12854.3|3.5,PPR_1|PF12854.3|19,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|0.0021,PPR_1|PF12854.3|0.0031,PPR_1|PF12854.3|0.00046,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|62,PPR_1|PF12854.3|0.83,PPR_1|PF12854.3|1.6e-05,PPR_1|PF12854.3|0.46,PPR_1|PF12854.3|58,PPR_1|PF12854.3|0.27,PPR_3|PF13812.2|5.9e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|6.8e+02,PPR_3|PF13812.2|0.71,PPR_3|PF13812.2|3.6e+03,PPR_3|PF13812.2|0.0035,PPR_3|PF13812.2|52,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|0.0074,PPR_3|PF13812.2|91,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|4.7e+03,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|33,PPR_3|PF13812.2|47,PPR_3|PF13812.2|95,DYW_deaminase|PF14432.2|2.6e-15,RPN7|PF10602.5|22,RPN7|PF10602.5|2.5e+03,RPN7|PF10602.5|4.3,RPN7|PF10602.5|2.2,RPN7|PF10602.5|15,RPN7|PF10602.5|7.4e+03,RPN7|PF10602.5|3.4e+02 R_Transcript_292101:2-2359(+)
TGCAATAAGAAAATTAGACATTATTGTGAAGTGGGTAACCTTAAAGAAGCTGTAGATGTGCTTTGTAGGTCCCCGAAATCGGAACTTGAGTTGGGTACTTATTGTTTAGTCCTTCAGCTTTGTGCTGAGCATAAGTCATTACTTTTTGGTCGTAAAGTTCATTCAGTCATTTCGTCGAACATTTGGCAGGCTGACAGTGTGTTAGGTGCAAAGTTAGTGTTCATGTATGTGAATTGTGGAGATTTAGAACAGGGGAGAAAGATCTTTGATCAGATTGCCAATGAAAAGGTTTATTTGTGGAACATTTTGATAAATGAGTATTCAAAAGTTGGTGATTTTTGGGAGGGAGTATATTTGTATTACAAAATGAAGGAGTTCGATGTCAAGCCTGATTCATATACGTTTTCCTGCGTGTTAAAGTGCTTTTCAGGGTTAAGGTTCTTGGAAGAAGGTGAAAAGGTTCATGGGTTGTTGTTAAAATTGCATCTTGGCATTAATACGACAGTTGTGAACTCCTTAATTAGCCTCTATTACAAGTGTGGTAGGGTTGAGAGTGCACAGAAGCTGTTTGATGAAATGCTTGACAGAGATGTTATATCTTGGAATTCTATGATAAGTGGGTATGCATTCAATGGGTTGCCTGTTAAAGGACTTGAGGTCTTCAAGCAAATGCTTTGTGAGGGTGTTGTGTTCGATCTCACAACTATGATTTGTGTTCTTGGAGCTTGTGCAGATATTGGTATCCTCGGCCTTGGTAAAAAGCTTCACACGTTTGCGATAAAAGCTGGTTTTGTTGGGGATGTAACCTGTGACAATACATTACTTGATATGTATTCAAAATGTGGAGATTTAGATAGTGCAATTCAAGTTTTTGAAAAGATGGATGATAGAAGTGTGGTGTCATGGACTTCGATGATAGCTTCATATGCTGGAGAAGGTCTATCTGCTGCTGCATTGAGATTATTTCGTGAAATGAGAGACAGTGGTGTGATACCTGACACTTATATTGTAACCAGTGTCTTGAATGCTTGTGCATCGAGTGGCTTGCTGGATAATGGCAAGGAGGTCCATGATTATGTTAGAAAGAGCCACATGATCTCCGACTTATCAGTCTGCAATGCACTTATGGACATGTATGTGAAGTGTGGAAGCATGGACGATGCTCAATTGGTTTTCAGTCAGATGTCAGCCAGGGATGTTGTCTCTTGGAACACCATGATTGGTGGTTACTCAAAAAATGGTCTTCCAAATGAAGCACTAAATTTATTTCTAGATATGCAGCATGACTCAGTACCTGATTGTGTTACAATGTCCTGCATATTGCCTGCTTGTGCCAGCCTAGCAGCTCTGGAGAGAGGCAAAGAAATTCATGCTCATGTGTTGAGGAACGGACACTTTGCCGATTTGTATGTTGCTAATGCACTCGTTGACATGTATGTGAAGTGTGGGGCTCTCATACTAGCAAGATCGGTATTTGATACGGTTCTTAGCAAGGACTTGATCTCATGGACAATAATGACTGCTGGGTATTGCTTGCATGGACTTGGAAATGAAGCTACTAATAGCTTCAATGTAATGAGACATGAAGGTATTGAACCTGATGAGAACTCTTTTGCTGCTATCCTACTTGGCTGCAGTCACTCGGGATTGCTTGATGAGGGAAGGAAATTTTATAGCATAATGAAGAATGATTGCAAAATCGAACCCAAGTTGGAGCACTATACTTGCATAGTTCAACTCCTTGCTAATGCAGGAAAATTAACAGAAGCGTATAAGTTCATCGAGAAGATGCCACTGAAACCAGATGCTGAAGTCTGGGGCGCTTTGCTTCAAGGTTGCAGACTCCATCATGATGTCAAACTGGCCGAGAAAGTGGCGGAACACATTTTTGAGCTGGAGCCATACAACAAGACGTACTCTATGGTTTTAGAAAATATGTACTCTGAGGCCAAAATATGGGAGAAGGTGAAATGGTTAAAGAGCAGGATCGGCCATCTTGGGAAGAAAAAGAATCAGGTTTGCAGCTGGATTGAAGTCAATGGGAAAGTTCAAATATTTTTTGCAGGGAAAACTAATGCACACCCAGAGTACAAAAAGATAGAGACACTTTTAAAGAAGCTAAGAGATAGGATGAAAGAAAACAATTACTCTCAAAAGCCAAGGTATGCTATGTTAGATCCCAATGGAATGGAGAATGAAGTGGCTCTTTGTGGCCACAGTGAGATGTCAGCCATCGCCTTTGGGATCTTAAGTTTGGCGCCTAGGAAGACCATTCGCGTCACAAAGAACTCGAGAGTATGCCATGTCATGAGATGGCAAAGTTCATGTCCAAAAATTTTCGTAGGGAAATCATCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_292101.p1 GENE.R_Transcript_292101~~R_Transcript_292101.p1 ORF type:5prime_partial len:786 (+),score=128.21,PPR|PF01535.16|11,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|0.00041,PPR|PF01535.16|84,PPR|PF01535.16|2.9e-06,PPR|PF01535.16|8.4e-08,PPR|PF01535.16|8.9e-05,PPR|PF01535.16|5.1e-06,PPR|PF01535.16|5.4,PPR|PF01535.16|0.001,PPR|PF01535.16|1.3e-08,PPR|PF01535.16|3.2,PPR|PF01535.16|0.0053,PPR|PF01535.16|5.4,PPR|PF01535.16|0.21,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|7.9e+03,PPR_2|PF13041.2|5.6,PPR_2|PF13041.2|9.9e+02,PPR_2|PF13041.2|3.8e-09,PPR_2|PF13041.2|1e-05,PPR_2|PF13041.2|9.6e-06,PPR_2|PF13041.2|0.00071,PPR_2|PF13041.2|1e-09,PPR_2|PF13041.2|0.0068,PPR_2|PF13041.2|9.4e-11,PPR_2|PF13041.2|63,PPR_2|PF13041.2|3.2e-05,PPR_2|PF13041.2|25,PPR_2|PF13041.2|0.47,PPR_2|PF13041.2|3.6e+02,PPR_1|PF12854.3|3.5,PPR_1|PF12854.3|19,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|0.0021,PPR_1|PF12854.3|0.0031,PPR_1|PF12854.3|0.00046,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|62,PPR_1|PF12854.3|0.83,PPR_1|PF12854.3|1.6e-05,PPR_1|PF12854.3|0.46,PPR_1|PF12854.3|58,PPR_1|PF12854.3|0.27,PPR_3|PF13812.2|5.9e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|6.8e+02,PPR_3|PF13812.2|0.71,PPR_3|PF13812.2|3.6e+03,PPR_3|PF13812.2|0.0035,PPR_3|PF13812.2|52,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|0.0074,PPR_3|PF13812.2|91,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|4.7e+03,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|33,PPR_3|PF13812.2|47,PPR_3|PF13812.2|95,DYW_deaminase|PF14432.2|2.6e-15,RPN7|PF10602.5|22,RPN7|PF10602.5|2.5e+03,RPN7|PF10602.5|4.3,RPN7|PF10602.5|2.2,RPN7|PF10602.5|15,RPN7|PF10602.5|7.4e+03,RPN7|PF10602.5|3.4e+02 R_Transcript_292101:2-2359(+)
CNKKIRHYCEVGNLKEAVDVLCRSPKSELELGTYCLVLQLCAEHKSLLFGRKVHSVISSNIWQADSVLGAKLVFMYVNCGDLEQGRKIFDQIANEKVYLWNILINEYSKVGDFWEGVYLYYKMKEFDVKPDSYTFSCVLKCFSGLRFLEEGEKVHGLLLKLHLGINTTVVNSLISLYYKCGRVESAQKLFDEMLDRDVISWNSMISGYAFNGLPVKGLEVFKQMLCEGVVFDLTTMICVLGACADIGILGLGKKLHTFAIKAGFVGDVTCDNTLLDMYSKCGDLDSAIQVFEKMDDRSVVSWTSMIASYAGEGLSAAALRLFREMRDSGVIPDTYIVTSVLNACASSGLLDNGKEVHDYVRKSHMISDLSVCNALMDMYVKCGSMDDAQLVFSQMSARDVVSWNTMIGGYSKNGLPNEALNLFLDMQHDSVPDCVTMSCILPACASLAALERGKEIHAHVLRNGHFADLYVANALVDMYVKCGALILARSVFDTVLSKDLISWTIMTAGYCLHGLGNEATNSFNVMRHEGIEPDENSFAAILLGCSHSGLLDEGRKFYSIMKNDCKIEPKLEHYTCIVQLLANAGKLTEAYKFIEKMPLKPDAEVWGALLQGCRLHHDVKLAEKVAEHIFELEPYNKTYSMVLENMYSEAKIWEKVKWLKSRIGHLGKKKNQVCSWIEVNGKVQIFFAGKTNAHPEYKKIETLLKKLRDRMKENNYSQKPRYAMLDPNGMENEVALCGHSEMSAIAFGILSLAPRKTIRVTKNSRVCHVMRWQSSCPKIFVGKSS*

Click here to download the sequence:
Link to NCBI Protein BLAST