Transcript Information: R_Transcript_292403.p1


Annotated TAIR IDAT5G04220.2
Annotated Gene NameCalcium-dependent lipid-binding (CaLB domain) family protein
Annotated Gene Symbol(s)SYTC, ATSYTC, NTMC2TYPE1.3, NTMC2T1.3, SYT3
Annotation TypeOrtholog
Chromosome Positionchr5:1155985-1158620 | Reverse length=540
E-Value7.6E-188
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.047043713800822
Replicate 20.21645670532266
Replicate 30.059037983495238
Condition 2: 8 Hour
Replicate 10.06310789934857
Replicate 20.17289341629783
Replicate 30.23391250799468
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.45129288014221


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_292403.p1 GENE.R_Transcript_292403~~R_Transcript_292403.p1 ORF type:3prime_partial len:388 (+),score=50.87,C2|PF00168.26|1.6e-23,SMP_LBD|PF17047.1|1.9e-13 R_Transcript_292403:24-1184(+)
ATGGGGTTACTTAGCATTTTATTAGGATTTTTGGGTTTTGTTTTCGGACTTCTTTTAGGACTTATCATCGGATTTTTTTTTTTCGTCTATTCAAAATCGAAGAAGGTTAAGGATCCAGTAATTACTCCACTTGTGGAACTTGATTCAATCAGACTTCAAAGCATCATCCCAGAGATCCCAAACTGGATAAAATCTCCCGATTGTGATCGAGTAGATTGGTTAAACAAGTTTTTGCTGAACATGTGGCCTTATCTTGACAAGGCAATCTGTGAGCAAATTAGAAGCACAGTGGAACCTATGTTTGGGGATTACATAGGACAATATCAGATTGATAACATTGAGTTCGAGAACCTAAGTCTTGGAACCCTCCCCCCTACATTTCAGGGTATGAAAGTATACGAGACGAATGAGAATGAACTAGTCATGGAGCCATCAATTAAATGGGCAGGAAATCCCAATATAGTGGTGGCCGTAACATCATCACTAATGTCTTTGAAAATCAGATTTCAGCTGGTGGACTTGCAAATATTTGCCACTCCAAGGATACATTTAAAACCCCTTGTTCCAACATTTCCATGTTTCTCTACCATCGTCGTTTCATTGATGGAAAAGCCACACGTGGATTTTGGGTTGAACGTCCTTGGAGGAGATATCATGGCCATACCTGGCCTTTATCGTTTTGTTCAGGAAACTATCAAGGAACAGGTGGCAAGCCTTTATCATTGGCCTTTGTTTCTCGAAATTCCAGTTCTTGATAGTTCAATATCGGCGGTGAAGAAACCGGTTGGCATATTACATGTGAATGTGGTGCGTGGAATAAAGCTACTGAAGATGGATTTAATAGGAGCATCTGATCCTTACGTCAAATTAAGGTTGAGTGGTGAAAGGATGGCGGCAAAGAAAACATCAACCAAGATGAAGACCCTCAACCCTGAGTGGAATGAGAAGTTCAAGCTCATTGTCAAGGATCCTCAAACCCAAACTCTTGAACTTCAAGTTTATGATTGGGATAAGGTGGGAGGACATGATAGGATAGGAGTGCAAATAGTCCCTTTGAAGCAATTAACTCCAAATGAGACAAAGGAATTCACACTTGATTTGGTCAAGAATTCTAATATGAGTGATTCTCAGAGTAAGAAAGCAAGAGGACAGCTAGTATTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_292403.p1 GENE.R_Transcript_292403~~R_Transcript_292403.p1 ORF type:3prime_partial len:388 (+),score=50.87,C2|PF00168.26|1.6e-23,SMP_LBD|PF17047.1|1.9e-13 R_Transcript_292403:24-1184(+)
MGLLSILLGFLGFVFGLLLGLIIGFFFFVYSKSKKVKDPVITPLVELDSIRLQSIIPEIPNWIKSPDCDRVDWLNKFLLNMWPYLDKAICEQIRSTVEPMFGDYIGQYQIDNIEFENLSLGTLPPTFQGMKVYETNENELVMEPSIKWAGNPNIVVAVTSSLMSLKIRFQLVDLQIFATPRIHLKPLVPTFPCFSTIVVSLMEKPHVDFGLNVLGGDIMAIPGLYRFVQETIKEQVASLYHWPLFLEIPVLDSSISAVKKPVGILHVNVVRGIKLLKMDLIGASDPYVKLRLSGERMAAKKTSTKMKTLNPEWNEKFKLIVKDPQTQTLELQVYDWDKVGGHDRIGVQIVPLKQLTPNETKEFTLDLVKNSNMSDSQSKKARGQLVL

Click here to download the sequence:
Link to NCBI Protein BLAST