Transcript Information: R_Transcript_29241.p1


Annotated TAIR IDAT1G17360.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 9949 Blast hits to 7480 proteins in 576 species: Archae - 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants - 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:5947441-5951399 | Forward length=1061
E-Value1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.561299320954
Replicate 28.0361074764068
Replicate 310.25001297689
Condition 2: 8 Hour
Replicate 18.3610270551569
Replicate 28.8520564136776
Replicate 310.335860831684
Condition 3: 24 Hour
Replicate 115.936939351314
Replicate 213.096603074799
Replicate 315.337819325621


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_29241.p1 GENE.R_Transcript_29241~~R_Transcript_29241.p1 ORF type:complete len:1066 (+),score=272.52 R_Transcript_29241:314-3511(+)
ATGGAGGCTGAAATAGCTCTTGATGTACCTTTGGACTATGCTTCCTTCCAAATTTTGCCTGAAAACAGGTATGAGGCATATATCTGTAGCGACGAGAAAGAGGAAATCATGGGACATGGTTCTCTTGATGAACTTATGGAGCACTTACCCAACGTAAAGGATCAACTTGCTGAAGGATCTCGTAGCAGTAGATTAGAGTTACCAGGCAATGTGAATCAAGAGGCATGGTTCACGAAAGCCACATTACAAAGGTTTCTTCATATAGTTGGTTCACCTGATTCGCTAAAGAAATCTGTTGCTATAAGCAATGAGATGTCCCAGTTGAAGGAAACAAGAAAGTTTCACCTTTCTTTATATCAAAAGGCTGGAGATGGGATTATGTCATCTGATAATTCAAAGAATGAGTTGCTGCGGGCAGTGGACTCCAGACTTGCAGCTCTGACAGAAGAACTGGTTTCAACCTTCAGCTTGGAAGCAGGAACTTCATTATCTTCTCAAGAGTTGATTAATCTGCGAAAATTCTGTCAACATTTTGGAGATGTAAATATCAGAAATCTATTGTCCAACTTGCCAGAAACGAGCCAAAAAAGCCAGACTGTTGTTCCCCAGGATAGTAAGGAGTCCTCTGGTCCAGTTATGTCGACGCATGACTATGTAAAGAAGACAGATGAAAAAATTCAAATTTCAGGATCATCAGATTCAGTTCAAGCCGTAAAATATAATGCATCCCCGGCCAAAGCTGCCGAGCTTGAGAGGCGAAGCTCAACAGAAAGCGATGACTCATCTTTCTCGAGTGAGGATGATCAACCACCTGTTGAAAGAAGTAGACCTCTTATAAGATCTGCATCTCCTAGAAGATCAGCATCTCCCATGAGAAGGATCCAAGTCGGAAGGTCAGGGCCTCGTCGGACCCCTGCCCTGACGATTAAGAGCCTCACACACTTTCCTGCCAGAGAACGGATCCCATCTTACAGGGACACGAGTAATGACGATCGATTAGAAGGATATGAGGAACCAAACAAAAAGACTGAGGTCAATGTAACCCGTATGAGTGTTCAAGATGCTATTAGTCTATTTGAAAGCAAGCAGAGAGATCAAGCAGTTGACCCTCAGAAAAAGAAGCCAGTTACCGATAATGCCACAAATGCCAACAAGTCTGTTTTGAGAAGATGGAGCTCAGGGATGGGAGAGTCCCAAAAGGCCCTTAGTCAGAACATTTCAGAGCATCAAGCTTCAGAGGATAGCTTGAACTTAGGAGATGAAGATGGTGTGAAGAGTACAGAAGTAAGACAACAAACAGATGTTGCTTTTGGAAATCCAGAATCAGAGGAAAAGGTTGAAGTAGGTACTGAATCAGAGACAAGTGAAAATTCTGCATCAAATCCGAATGAAGATGATGTTCAAGAATCTCAAGTTGAGAGGACAAGTGAAAAGTTGGATTCAGCTGAATGGAGTAGGCAGAAGGAAGCCGAATTGAGCCAGATGCTGATGAAGTTTGCACAGTTTAATCAGAGCAACCATAAGATTTCTGAGCCTTACAATAACAACAACCGGAATTCACGCTTGGAGAAAAGCAGTGTTTCTGGTCTTCACAAGGAGAGAAGGGATGAGAAACTTAAAGGGGAAAATGCTGGAAAGAAGGTAGAGAAACAGACAGAGATTAGAGCGAAACAGAAAATTGTAGATAGGCCAAAGACAGAAAAATCTTCTCCAAAGGTTAGTGATGTAGGAAAGAAACAAACTACGAGCAGAATTCCAAGTCTTACCAAAACTACATCAGTGTCTTCAAACTCCAAAAAGGAAGCCCCAAGACCTGCCGTGGCAAAGAAGGCTCCGTCTAAATCTTCTTCCCTGCCAGCTACTAGGAAGTCATGGCCATCGACTCCATCACCAAGGGTCACAGGGACATTACCCACTAAAAGTCTGACAGGTACACCTTCTGCAACTACAGCACCTCGTCAGAAATCCCAGTCACTAGCACTTCTTCAGAAATCCCAGTCACCAGCAATTCATCAGAAACCCCAGTCACCAGCATCACTATCAAGACCAAGTCCGAAATTGGAAAGATTGCAGCAGCAGCCGAAAGAAGTGAAAAAGCCGCAGGTTGATGCAAAAAAGAGTTTCAAGAAAATTGATGAAAGTAAGAATCTCGTCGTACCAAAAAATGGGAAAACAACAAAACCAAAAACCAAAACAAAAACTGCTGGAGTTCCTGAAGATGCTTCTGCTACCAGTCCAGTCAAAGCAATCGTGTGCAAGAAGGTTACCAAGAGGAGCAGTGTGGTTCCACTTGAGGCAAAGCCATCTACTCGCAAGGCGCCTGGAACAAGCCCTGCAAAAAAACCAACGGTTCAAACCACAGAGGTTCCTGTTTCTGCTCAGACCGAAGAAACTGTAAGCAAGTGTGATAATCCCATTAACATTCAAGAGAATGCTGGAGCTATCATTTCTGATACAGTTGATCAGGTGGAGGGAAGTCCAGTTTTAGAGGCTGAGAATGGTCATCTCGAGCAAGAAAAAGAACTGGAAACTGAAAAACCTGAAAATGGCTGCGAAGAGAAGGCATCTGATGATGGCCCTGTTGAAGTTGCTGAAAGAATGGAGTCACCAATGGAGATTCAGCCTGAATCAGAACCACTGATCTCACCGACAGCTTGGGTGGAAAACAATCACCAAGATCTATCTATTCCGAGTGGTAACAGCTCTGCACCATCTCCTCCCAATCATGATGTGGTAGCCCCTTCTGAACCCCGGGTCCGTCATTCACTGTCACAGATGCTTCTTGAAGAAAGCAGTGAACCAGACATCATTGAGTGGGGAAATGCTGAAATTCCTCCTACCATGGTCTATCAGAAAGACGCTCCCAAAGGCTTGAAGAGGCTTTTGAAATTTGCTCGGAAGAATAAGGGAGAAGCGAATGGAGCTGCATGGGCTAGCCCATATACCTCTGATGGTGAGGACGATGGTGATGAATATAGAACCCTTGGTAAGAGAAATTCAGACAATCTGCTGAGAAAGGTTGCACTCCATTCGAAGAACTATGGAGAAGGTTTCCTGTCAGACTCTGAACCACTATCTGCACGATCAAATGCAAGCAATAGCTCTGCTCGAAGTTCAAACAAATTACAGGAAGGCCACACCTCAAAAGGATCAAGATCATTCTTCTCTCTGTCAGCATTCCGTGGGAGCAAAAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_29241.p1 GENE.R_Transcript_29241~~R_Transcript_29241.p1 ORF type:complete len:1066 (+),score=272.52 R_Transcript_29241:314-3511(+)
MEAEIALDVPLDYASFQILPENRYEAYICSDEKEEIMGHGSLDELMEHLPNVKDQLAEGSRSSRLELPGNVNQEAWFTKATLQRFLHIVGSPDSLKKSVAISNEMSQLKETRKFHLSLYQKAGDGIMSSDNSKNELLRAVDSRLAALTEELVSTFSLEAGTSLSSQELINLRKFCQHFGDVNIRNLLSNLPETSQKSQTVVPQDSKESSGPVMSTHDYVKKTDEKIQISGSSDSVQAVKYNASPAKAAELERRSSTESDDSSFSSEDDQPPVERSRPLIRSASPRRSASPMRRIQVGRSGPRRTPALTIKSLTHFPARERIPSYRDTSNDDRLEGYEEPNKKTEVNVTRMSVQDAISLFESKQRDQAVDPQKKKPVTDNATNANKSVLRRWSSGMGESQKALSQNISEHQASEDSLNLGDEDGVKSTEVRQQTDVAFGNPESEEKVEVGTESETSENSASNPNEDDVQESQVERTSEKLDSAEWSRQKEAELSQMLMKFAQFNQSNHKISEPYNNNNRNSRLEKSSVSGLHKERRDEKLKGENAGKKVEKQTEIRAKQKIVDRPKTEKSSPKVSDVGKKQTTSRIPSLTKTTSVSSNSKKEAPRPAVAKKAPSKSSSLPATRKSWPSTPSPRVTGTLPTKSLTGTPSATTAPRQKSQSLALLQKSQSPAIHQKPQSPASLSRPSPKLERLQQQPKEVKKPQVDAKKSFKKIDESKNLVVPKNGKTTKPKTKTKTAGVPEDASATSPVKAIVCKKVTKRSSVVPLEAKPSTRKAPGTSPAKKPTVQTTEVPVSAQTEETVSKCDNPINIQENAGAIISDTVDQVEGSPVLEAENGHLEQEKELETEKPENGCEEKASDDGPVEVAERMESPMEIQPESEPLISPTAWVENNHQDLSIPSGNSSAPSPPNHDVVAPSEPRVRHSLSQMLLEESSEPDIIEWGNAEIPPTMVYQKDAPKGLKRLLKFARKNKGEANGAAWASPYTSDGEDDGDEYRTLGKRNSDNLLRKVALHSKNYGEGFLSDSEPLSARSNASNSSARSSNKLQEGHTSKGSRSFFSLSAFRGSKS*

Click here to download the sequence:
Link to NCBI Protein BLAST