Transcript Information: R_Transcript_292539.p1


Annotated TAIR IDAT5G03340.1
Annotated Gene NameATPase, AAA-type, CDC48 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:810091-813133 | Reverse length=810
E-Value1.1E-164
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.1594280603101
Replicate 23.107755657286
Replicate 35.9540978589277
Condition 2: 8 Hour
Replicate 15.0386075884223
Replicate 26.2965660058212
Replicate 315.923615092975
Condition 3: 24 Hour
Replicate 112.514905745066
Replicate 27.7233217053646
Replicate 312.32664957096


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_292539.p1 GENE.R_Transcript_292539~~R_Transcript_292539.p1 ORF type:internal len:277 (-),score=70.39,CDC48_N|PF02359.14|2.8e-22,CDC48_N|PF02359.14|1.4e+04,CDC48_2|PF02933.13|4.8e-13,AAA|PF00004.25|0.0049,AAA|PF00004.25|0.0054,Mg_chelatase|PF01078.17|0.019,Mg_chelatase|PF01078.17|0.036,AAA_16|PF13191.2|0.019,AAA_16|PF13191.2|0.071,AAA_17|PF13207.2|5.1e+03,AAA_17|PF13207.2|0.13,AAA_17|PF13207.2|0.17,AAA_19|PF13245.2|0.06,AAA_19|PF13245.2|0.09,AAA_18|PF13238.2|9.6e+03,AAA_18|PF13238.2|0.23,AAA_18|PF13238.2|0.29 R_Transcript_292539:3-830(-)
TTGGTTGTAGATGAAGCTGTCAATGACGACAATTCAGTGGTTTCTATGCACCCTGATACGATGGAAAAGCTTCAGCTTTTTCGGGGTGATACGGTTCTAGTTAAGGGAAAGAAAAGGAGAGATACAATCTGTATCGCTCTTGCTGATGAGACATGTGAAGAACCCAAAATTAGGATGAACAAGGTTGTAAGGTCAAACCTAAGGGTGAGACTTGGAGATGTGGTTTCTGTACATCAGTGTCCTGATGTAAAGTATGGGAAACGGGTGCATATTCTTCCTATTGATGACACTGTTGAGGGAGTCACTGGAAATCTCTTTGATGCTTACTTGAAACCTTACTTCTTGGAAGCATATCGTCCTGTGCGAAAAGGTGACTTGTTTCTTGTTAGAGGGGGTATGAGGAGTGTAGAGTTTAAGGTCATTGAGACTGACCCTCCTGAGTACTGTGTTGTGGCCCCTGATACTGAGATCTACTGTGAGGGGGAGCCTGTAAAACGAGAAGATGAAAATAGATTGGATGAGGTTGGCTATGATGATGTTGGTGGAGTACGTAAGCAGATGGCACAGATTAGGGAGCTAGTGGAGCTGCCACTTAGACATCCTCAACTGTTCAAATCAATTGGTGTGAAGCCACCAAAAGGAATTCTTCTTTATGGACCTCCAGGGTCTGGGAAAACTTTAATAGCACAGATTAGGGAGCTAGTGGAGCTGCCACTTAGACATCCTCAACTGTTCAAATCAATTGGTGTGAAGCCACCAAAAGGAATTCTTCTTTATGGACCTCCAGGGTCTGGGAAAACTTTAATAGCACAGATTAGGGAGCTAGTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_292539.p1 GENE.R_Transcript_292539~~R_Transcript_292539.p1 ORF type:internal len:277 (-),score=70.39,CDC48_N|PF02359.14|2.8e-22,CDC48_N|PF02359.14|1.4e+04,CDC48_2|PF02933.13|4.8e-13,AAA|PF00004.25|0.0049,AAA|PF00004.25|0.0054,Mg_chelatase|PF01078.17|0.019,Mg_chelatase|PF01078.17|0.036,AAA_16|PF13191.2|0.019,AAA_16|PF13191.2|0.071,AAA_17|PF13207.2|5.1e+03,AAA_17|PF13207.2|0.13,AAA_17|PF13207.2|0.17,AAA_19|PF13245.2|0.06,AAA_19|PF13245.2|0.09,AAA_18|PF13238.2|9.6e+03,AAA_18|PF13238.2|0.23,AAA_18|PF13238.2|0.29 R_Transcript_292539:3-830(-)
LVVDEAVNDDNSVVSMHPDTMEKLQLFRGDTVLVKGKKRRDTICIALADETCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIYCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAQIRELV

Click here to download the sequence:
Link to NCBI Protein BLAST