Transcript Information: R_Transcript_293433.p1


Annotated TAIR IDAT2G13770.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:5736603-5737847 | Forward length=343
E-Value3E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.20980414890481
Replicate 20.24133678639423
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 21.0140348915208
Replicate 30.25158281249307


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_293433.p1 GENE.R_Transcript_293433~~R_Transcript_293433.p1 ORF type:5prime_partial len:87 (-),score=11.57,Plant_tran|PF04827.10|6.9e-29 R_Transcript_293433:145-405(-)
CCTAACGTTTCGTATGTCGTAAACGGCCATGAATATCATATGGGTTATTATCTTAATGATGATATATATCCAAAATGCATAGCGTTCATGCCATCTGTTGCTGCTCTGCAAACTACAAAGCATAGGTTGTTGGCTCAACATCAAGAAATTGTGAGAAAAGATGTTGAGCGTGCTTTTGGTGTTTTACAAGCTCGTTTTGCAATTATCAGGCAACCATCTCTAGCATGGGAAGATTATGAAAGTCTGCATCATTATGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_293433.p1 GENE.R_Transcript_293433~~R_Transcript_293433.p1 ORF type:5prime_partial len:87 (-),score=11.57,Plant_tran|PF04827.10|6.9e-29 R_Transcript_293433:145-405(-)
PNVSYVVNGHEYHMGYYLNDDIYPKCIAFMPSVAALQTTKHRLLAQHQEIVRKDVERAFGVLQARFAIIRQPSLAWEDYESLHHYA*

Click here to download the sequence:
Link to NCBI Protein BLAST