Transcript Information: R_Transcript_29348.p1


Annotated TAIR IDAT1G55890.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:20901364-20902560 | Forward length=398
E-Value3E-45
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.23912175923212
Replicate 20.091686901381214
Replicate 30
Condition 2: 8 Hour
Replicate 10.10692517444212
Replicate 20.39058308892901
Replicate 30.15852935039639
Condition 3: 24 Hour
Replicate 10.10025243330875
Replicate 20.19262234838932
Replicate 30.47789748224667


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_29348.p1 GENE.R_Transcript_29348~~R_Transcript_29348.p1 ORF type:complete len:229 (-),score=51.17,PPR_2|PF13041.2|3.8e-16,PPR_2|PF13041.2|3.2e-08,PPR_2|PF13041.2|3.1e-09,PPR_2|PF13041.2|8.8e-15,PPR_2|PF13041.2|0.92,PPR_2|PF13041.2|5.1e+02,PPR_1|PF12854.3|1.3e-09,PPR_1|PF12854.3|0.00017,PPR_1|PF12854.3|6.6e-10,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|0.0095,PPR_1|PF12854.3|1.4e+02,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|0.0029,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|0.06,PPR|PF01535.16|11,PPR_3|PF13812.2|1.4e-06,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|34,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|48,PPR_3|PF13812.2|2.1e+03 R_Transcript_29348:4111-4797(-)
ATGTCGTTGGAGTTGTCGATCGATTTGGATTGCTCTTCGTATAATACAATGATCCATGCTCTTTGTGAGATGGGGAAATTGGATGATGCACTTTTGATGGTTGAGGAGATGAAGGCGAAGGGGCTGAGCCCGAATGTCATCACTTTTAATACACTTCTTGATGCGTTTTATAGGGAAAGGGGTTTCGAGGGAGGGGAGAGGATATGGAATATGATGGTTGAGGACAATGTTGTTTGTAATACTCGGAGTTATAATTTGAAGCTCCAGGCTACGGTTGATCTAGGAGAGCTTGATAGTACGGTTGATTTGTTTGGAACATTGGAGAAAGAAGGGTTGAAGCCTGATGTCAATACTTTCAATGCCTTGATCAAGGGATTCTGTGATCAAGGAAATGTGGAAGAAGCAAAAGGGTGGTTCAATTCATTGATAGAAAGTGGTGGTACCCCAAATAGAATTACATTTTCGATTCTCATCCCAAGGTTGTGTGACCATGGTGATTATGAGTTGGTGTTTGATTTGTGCGAGAAGATGTTCAACCGGCAACTTGTGGTTGACGAGTCTCTGTTGCAGCTTGTTGTCAAAGTGCTGGTAAAGAATTCGATGCTTAAAGAAGCCGAAGAACTCGTAGAGCTTGGCAACTCGAATACTTATGTTCAATACAACCTAGCATTGCCTGCAGACAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_29348.p1 GENE.R_Transcript_29348~~R_Transcript_29348.p1 ORF type:complete len:229 (-),score=51.17,PPR_2|PF13041.2|3.8e-16,PPR_2|PF13041.2|3.2e-08,PPR_2|PF13041.2|3.1e-09,PPR_2|PF13041.2|8.8e-15,PPR_2|PF13041.2|0.92,PPR_2|PF13041.2|5.1e+02,PPR_1|PF12854.3|1.3e-09,PPR_1|PF12854.3|0.00017,PPR_1|PF12854.3|6.6e-10,PPR_1|PF12854.3|3e+03,PPR_1|PF12854.3|0.0095,PPR_1|PF12854.3|1.4e+02,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|0.0029,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|0.06,PPR|PF01535.16|11,PPR_3|PF13812.2|1.4e-06,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|34,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|48,PPR_3|PF13812.2|2.1e+03 R_Transcript_29348:4111-4797(-)
MSLELSIDLDCSSYNTMIHALCEMGKLDDALLMVEEMKAKGLSPNVITFNTLLDAFYRERGFEGGERIWNMMVEDNVVCNTRSYNLKLQATVDLGELDSTVDLFGTLEKEGLKPDVNTFNALIKGFCDQGNVEEAKGWFNSLIESGGTPNRITFSILIPRLCDHGDYELVFDLCEKMFNRQLVVDESLLQLVVKVLVKNSMLKEAEELVELGNSNTYVQYNLALPADN*

Click here to download the sequence:
Link to NCBI Protein BLAST