Transcript Information: R_Transcript_293853.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value4E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.11930039839685
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.16003833298853
Replicate 20.43844866355266
Replicate 30.23727595582205
Condition 3: 24 Hour
Replicate 10.45015308289616
Replicate 20.57660807557065
Replicate 30.28611378675683


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_293853.p1 GENE.R_Transcript_293853~~R_Transcript_293853.p1 ORF type:complete len:153 (+),score=14.40,UBN2|PF14223.2|4.5e-16,UBN2_2|PF14227.2|1.3e-09,UBN2_3|PF14244.2|6.4e-09 R_Transcript_293853:279-737(+)
ATGCTGGTTCATGATACTTTTGGCTTTCCGTTTGAGGACCCTGCCTATACCTCATGGTTTCAAATCGATCAACACATTTGTACTTGGCTCCTTGCTACTCTCTCCCGTAAGGTCCTTATTGAGGTACATGAACTTTCCCATTTGTTTGAAATCTGGGCTCGGTTGGAAAATCGTTTTAATATTGGTGGTATGGCTCGTTTGTTTGAACTTAAAGGTGCTCTTAATGATGTTCGCAAACTTTCTACTCAGTCCATGGAGTCATATCTACGTGATATTAAGGTTATTGCTGATAATTTAGCATCTATTTGTAGTCCCATATCGAACCGTGAATTGATTGAAACTGTAATTTTTGGTCTCGATAGTGACTATAACTATTTTGTAACTGCTATATCACAATTCATGGACACATTGAGTTTCGATGATCTTCATAGTAGATTAATTATTTTTGAGCAACAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_293853.p1 GENE.R_Transcript_293853~~R_Transcript_293853.p1 ORF type:complete len:153 (+),score=14.40,UBN2|PF14223.2|4.5e-16,UBN2_2|PF14227.2|1.3e-09,UBN2_3|PF14244.2|6.4e-09 R_Transcript_293853:279-737(+)
MLVHDTFGFPFEDPAYTSWFQIDQHICTWLLATLSRKVLIEVHELSHLFEIWARLENRFNIGGMARLFELKGALNDVRKLSTQSMESYLRDIKVIADNLASICSPISNRELIETVIFGLDSDYNYFVTAISQFMDTLSFDDLHSRLIIFEQQ*

Click here to download the sequence:
Link to NCBI Protein BLAST