Transcript Information: R_Transcript_293855.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value5E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.047165273784803
Replicate 20.054254006243664
Replicate 30.1775716092725
Condition 2: 8 Hour
Replicate 10.12654193771186
Replicate 20.11556011287434
Replicate 30.093806773231974
Condition 3: 24 Hour
Replicate 10
Replicate 20.34194199830352
Replicate 30.056557376451931


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_293855.p1 GENE.R_Transcript_293855~~R_Transcript_293855.p1 ORF type:complete len:387 (-),score=32.35,UBN2|PF14223.2|1.7e-19,UBN2_2|PF14227.2|6.2e-14,UBN2_3|PF14244.2|4.7e-13 R_Transcript_293855:514-1515(-)
ATGGCCATCCCTACCGCTGCTTCTATGGGCGTTGAGTATGGGGCATCTCAGCCCGCGGCTGTTCCTTTTGGTGCACCGCCTCATGCTCCTTCTCTCTCTTTTGGCGGGTCTTTCATCGGTCAGGCGGCCTCTCCGTCGCAGCTCGCTACCTCCTTTTCCGGTCCTTTTGCTCCCAACGTAACCAATTTGGTTACCACTCGGCTTGCTTCGGTTGATGACTTCTTGACTTGGCGTACTCAATTTAGTGCTCTTCTTATCTCACAGCGCCTACTCGGATATGTTGACGGTTCCATCCCGGCTCCTCCTATGTTGGTTCATGATGCGTTTGGTTATCAGTTTGAGAATCCGGCCTACTCTTCTTGGTTTCAGATTGATCAACACATACGCACTTGGCTCCTCGCTACTCTCTCTCGTGAGGTCCTTATTGAGGTACATGACCTTTCTCACTCTTTTCAAATCTGGAACCGGTTGGAGAATCGTTTCAACACTGCCAGTATGGCTCGTTCATTAGAACTCAAACGTGTTCTCAACAATGTGCGTAAACAGTCTACTCAGTCTATGGAGTCCTATTTGCGTGAAATTAAGGTTGTTGCTGATAACTTAGCTTCCATCCGCAATCCTATATCGAACCGTGAATTGATTGAAACTGTCATTTTTGGTCTCGATAGTGATTATGACTCCTTTGTAACTGCTATCTCTCAATTTTTGGATACGTTGAGTTTCGATGACCTTCGTAGTAGATTGATTATATTTGAGCAACGTTTAAAATATTTGCGCGATCGCGATACTGGCACCACTACCCATCAAGCCTTTACTACCTCATTGGTCCAAGGGGGTGTTTCTTCTTCTGACCAGCCTGTAATATCTTCTACTCAAGGCTCCTCTGTTCGCTCCCGTAACAATCGCACCAATAACTCGCGCAACAATCGTCACAATGGACGTGGGGGCCGTACAACAGGAATGGACGTGGACGTGGTCGTGGCTCCACCCAGCCTGCCGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_293855.p1 GENE.R_Transcript_293855~~R_Transcript_293855.p1 ORF type:complete len:387 (-),score=32.35,UBN2|PF14223.2|1.7e-19,UBN2_2|PF14227.2|6.2e-14,UBN2_3|PF14244.2|4.7e-13 R_Transcript_293855:514-1515(-)
MAIPTAASMGVEYGASQPAAVPFGAPPHAPSLSFGGSFIGQAASPSQLATSFSGPFAPNVTNLVTTRLASVDDFLTWRTQFSALLISQRLLGYVDGSIPAPPMLVHDAFGYQFENPAYSSWFQIDQHIRTWLLATLSREVLIEVHDLSHSFQIWNRLENRFNTASMARSLELKRVLNNVRKQSTQSMESYLREIKVVADNLASIRNPISNRELIETVIFGLDSDYDSFVTAISQFLDTLSFDDLRSRLIIFEQRLKYLRDRDTGTTTHQAFTTSLVQGGVSSSDQPVISSTQGSSVRSRNNRTNNSRNNRHNGRGGRTTGMDVDVVVAPPSLP*

Click here to download the sequence:
Link to NCBI Protein BLAST