Transcript Information: R_Transcript_294775.p1


Annotated TAIR IDATMG00750.1
Annotated Gene NameGAG/POL/ENV polyprotein
Annotated Gene Symbol(s)ORF119
Annotation TypeOrtholog
Chromosome PositionchrM:220830-221189 | Forward length=119
E-Value1.7E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.44831833923871
Replicate 20.46658445369551
Replicate 30.48224710728742
Condition 2: 8 Hour
Replicate 10.34366126241748
Replicate 20.49690848535968
Replicate 30.36090921701354
Condition 3: 24 Hour
Replicate 10.40276854785446
Replicate 20.20636499546739
Replicate 30.28159620065014


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_294775.p1 GENE.R_Transcript_294775~~R_Transcript_294775.p1 ORF type:5prime_partial len:855 (+),score=55.93,RVT_1|PF00078.23|6.8e-25,rve|PF00665.22|8.4e+03,rve|PF00665.22|3.2e-18 R_Transcript_294775:2-2566(+)
AGTCCCGTTCAAGTAGTTCCTAAAAAGGGAGGAATGACGGTGATTCAAGGGGATAACAACACATTGATCCCAACTCGTCTTGTTACGGGGTGGAGGATGTGTATTGATTATCGCAAGTTGAATTCCGTCACCCGCAAGGACCACTATCCTCTTCCATTCATTGATCAAATGCTTGAACGACTGGCTAAGCACTCTCATTTTTGCTATCTTGATGGTTACTCGGGATTTTTCCAAATCCCAATACATCCCGAGGACCAAGAGAAGACGACATTTACTTGCCCTTATGGCACCTTCGCTTATCGAAGGATGCCATTCGGGTTATGCAATGCACCCGCGACATTTCAACGGTGTATGATGTCTATCTTTTCTGATTTTGTTGAGAAAATCATGGAAGTCTTCATGGACGACTTTAGCGTCTATGGGACTAATTTTGATGAATGTTTAGCCAATCTTTCACGAGTCCTTGAACGATGTGAGGAGGTAAACTTGGTTTTGAATTGGGAGAAGTGTCATTTTATGGTTCAAGAGGGAGTCGTGTTGGGTCATATTGTGTCTAGTCGGGGTATCGAAGTCGATAGAGCTAAGGTTGAGGTGATCGAAAAACTTCCACCTCCCACTAATGTCAAAGGGGTGAGAAGTTTCCTTGGTCACGCCGGTTTTTACCGACGTTTTATCAAGGACTTTTCAAAGATCGCAAAGCCTCTAACCCAGCTCCTCGTCAAAGATACTCCTTTCATCTTTTCTAATGATTGTCTTGAAGCTTTTTCCAGTTTAAAGAAGGCCCTTGTGTCTGCGCCGATTGTACAACCGCCCGATTGGAATCTACCTTTTGAGATTATGTGCGATGCCAGCGATTTTGCAATTGGGTCGGTGTTAGGGCAACGTAAAGATAAAAAGCTTCACGCCATTTATTATGCCAGCAAAACTTTGGATGGGACACAGGTTAACTACACCACAACCGAGAAGGAACTTCTAGCAGTTGTTTATTCATTGGATAAATTTCGGCCTTATCTTATTGGGTCGAAGGTTATTGTTCATACAGACCATGCTGCTCTCAAGTATCTACTGTCCAAAAAGGAATCCAAACCTCGGTTAATCCGTTGGATACTTGCTCTTCAAGAATTCAACCTTGAAATCAAAGACAAGTGTGGAGCCGAAAATGTGGTTGCAGATCATCTATCAAGACTTCCTTTCCCCGGTTCTTCTAACGACAGTCCCATCAATGATTCAATACCGGGAGAACATCTTCTTTCCATTCACTCTAATCAAATTCCATGGTATGCGGATATCGCCAATTATCTTGCTTGTGGCGCCCAACCTATTGGCTATTCCTACCAACAACGCAAGAAATTTTTCCATGATGTTCGTCACTACTTATGGGATGACCCTCTACTCTTCAAGCGGTGTAGTGATGGGATTATTAGAAGATGTGTGCCCGAATTTGAGGTCCCGAGTATCCTATCACATTGCCACGAGCAACCTTGCGGAGGTCATATGGGCACTTCAAAGACTTGTGCTAAGATCCTCCAATGTGGATTTTATTGGCCAACTCTATTTCGGGACGCTAATACCTTCGTCAAGAGTTGCGATCGTTGTCAACGAGTTGGCAATATCACTAAACGGCATGAGATGCCCCTTACTAACATACTTGAGGTTGAAATCTTTGATGTTTGGGGCATCGACTTCATGGGGCCCTTTCCCTCATCTTTTGGGAACAAATTCATCTTGGTAGCCATTGATTACGTGTCTAAGTGGGCGGAGGCCGTGGCATCTCCATTCAATGATTCACGGGTAGTGGCTAAGCTCTTCAAGAAGATTATATTTCCAAGATTCGGGGTTCCACGAGTCGTTATTAGTGATGGTGGGTCTCACTTTCGAGAAAAGAGTCTTGAAAAACTGTTAGCAAAATATGAGGTGAATCACCGAATTGGCCTTGCTTATCATCCCCAAACGAGTGGCCAAGTTGAAGTTACAAATAGAGAATTGAAACACATTCTTGAGAAAACGGTGCAAACAAGAAAAGATTGGTCTCTATGTTTGGATGATGCCCTATGGGCTTATCGGACGGCATTTAAAACACCTATAGGAACCACACCATACCGGCTCCTATATGGTAAATCATGTCATTTGCCGGTCGAGTTGGAGCACAAGGCTTATTGGGCGATAAAGGCCCTGAACCTTAACCTAAAAGATGCGGGAGCCAAAAGGCTTTTGGACCTTAACGAGCTTGATGAAATCAGATTTGACGCTTATGAAAACGCCAAACTCTACAAGGAGAAGACTAAGAAATGGCATGATCAAAGGATCACCTCCCGGGAGTTCAAGGAGGGTGACCAAGTCCTTCTCTATAACTCTAGACTCAAGCTCTTTCCCGGGAAGCTCAAATCCCGATGGTCCGGCCCCTTCCTTGTACACAAAGTTTACCCTCATGGAGCCATTGCTATTGGAAAGGAAGGTAGCGACGTCTTTAAGGTTAATGGCCATCGCCTCAAGCATTATCATGTTGGCACCCCATTGGGCCGAGTGACTACGGTGTCACTCCTTGACCCCCCTCCAATTGTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_294775.p1 GENE.R_Transcript_294775~~R_Transcript_294775.p1 ORF type:5prime_partial len:855 (+),score=55.93,RVT_1|PF00078.23|6.8e-25,rve|PF00665.22|8.4e+03,rve|PF00665.22|3.2e-18 R_Transcript_294775:2-2566(+)
SPVQVVPKKGGMTVIQGDNNTLIPTRLVTGWRMCIDYRKLNSVTRKDHYPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPEDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVYGTNFDECLANLSRVLERCEEVNLVLNWEKCHFMVQEGVVLGHIVSSRGIEVDRAKVEVIEKLPPPTNVKGVRSFLGHAGFYRRFIKDFSKIAKPLTQLLVKDTPFIFSNDCLEAFSSLKKALVSAPIVQPPDWNLPFEIMCDASDFAIGSVLGQRKDKKLHAIYYASKTLDGTQVNYTTTEKELLAVVYSLDKFRPYLIGSKVIVHTDHAALKYLLSKKESKPRLIRWILALQEFNLEIKDKCGAENVVADHLSRLPFPGSSNDSPINDSIPGEHLLSIHSNQIPWYADIANYLACGAQPIGYSYQQRKKFFHDVRHYLWDDPLLFKRCSDGIIRRCVPEFEVPSILSHCHEQPCGGHMGTSKTCAKILQCGFYWPTLFRDANTFVKSCDRCQRVGNITKRHEMPLTNILEVEIFDVWGIDFMGPFPSSFGNKFILVAIDYVSKWAEAVASPFNDSRVVAKLFKKIIFPRFGVPRVVISDGGSHFREKSLEKLLAKYEVNHRIGLAYHPQTSGQVEVTNRELKHILEKTVQTRKDWSLCLDDALWAYRTAFKTPIGTTPYRLLYGKSCHLPVELEHKAYWAIKALNLNLKDAGAKRLLDLNELDEIRFDAYENAKLYKEKTKKWHDQRITSREFKEGDQVLLYNSRLKLFPGKLKSRWSGPFLVHKVYPHGAIAIGKEGSDVFKVNGHRLKHYHVGTPLGRVTTVSLLDPPPIV*

Click here to download the sequence:
Link to NCBI Protein BLAST