Transcript Information: R_Transcript_295057.p1


Annotated TAIR IDAT1G53260.1
Annotated Gene NameLOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 32763 Blast hits to 18534 proteins in 929 species: Archae - 22; Bacteria - 2420; Metazoa - 15140; Fungi - 5401; Plants - 5313; Viruses - 485; Other Eukaryotes - 3982 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:19859393-19860421 | Reverse length=271
E-Value2E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4213111470545
Replicate 21.0712398171581
Replicate 31.1687111018445
Condition 2: 8 Hour
Replicate 11.3742067062229
Replicate 21.2549474502706
Replicate 32.8709180062857
Condition 3: 24 Hour
Replicate 12.5768967296403
Replicate 22.0254829593387
Replicate 32.3451112164533


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_295057.p1 GENE.R_Transcript_295057~~R_Transcript_295057.p1 ORF type:3prime_partial len:196 (+),score=34.96 R_Transcript_295057:302-886(+)
ATGAGCAACTTCCAAGGAAATCCACCGCCACCTGGCGTGCATTCGTTTCCAAATTCGGTTCCTCCAGGTTCGTCAGTTCAGCAGCATTTTGGAAACATTCCGAGGCCACATGACCAATTTTATCAGTATCATACAAACCATAATTTCCCTGCGCCACCACCTCCGCATGGCCAAAGCTTTCAACCATATGTTAGTCCACCGGCTCAATTTCATGTTGGTCAGTATCCACAAAATTTAAGCCAAATGCCTAATCATTATCAGTATGGGAATGGGAACCCCACTGACATGCCACCCTATCAACCTTTGCAACAGCAAGTGGCCCCTACTTCGAGTAACTTCAATGGGGTAGTGTACAACGTGCACCCGCGGCATCAGTCAGGAACGGATGTGGCTGCTGCTCAACATTTTGGTACAAACAATGGTGGAAGTTTTGAGCATAAAGAGCCGGCGCTGGATAATATAATTAAGAGGGCCGATTTTGGTGGATGGGTCCCTGAACCAGAAAATGCCCATCAGGTTGGCTCATCGACTACCTGTGAAAATGAGGAAGATCAAAAGGATAAGCCAGGAGAACAGCAAATTCCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_295057.p1 GENE.R_Transcript_295057~~R_Transcript_295057.p1 ORF type:3prime_partial len:196 (+),score=34.96 R_Transcript_295057:302-886(+)
MSNFQGNPPPPGVHSFPNSVPPGSSVQQHFGNIPRPHDQFYQYHTNHNFPAPPPPHGQSFQPYVSPPAQFHVGQYPQNLSQMPNHYQYGNGNPTDMPPYQPLQQQVAPTSSNFNGVVYNVHPRHQSGTDVAAAQHFGTNNGGSFEHKEPALDNIIKRADFGGWVPEPENAHQVGSSTTCENEEDQKDKPGEQQIP

Click here to download the sequence:
Link to NCBI Protein BLAST