Transcript Information: R_Transcript_29530.p1


Annotated TAIR IDAT1G15360.1
Annotated Gene NameIntegrase-type DNA-binding superfamily protein
Annotated Gene Symbol(s)SHN1, WIN1
Annotation TypeOrtholog
Chromosome Positionchr1:5283609-5284506 | Forward length=199
E-Value9.5E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.259451387498
Replicate 26.0168502685511
Replicate 39.0259383960959
Condition 2: 8 Hour
Replicate 18.2228650942241
Replicate 28.6773571324004
Replicate 311.893368749776
Condition 3: 24 Hour
Replicate 111.410372846008
Replicate 29.4475511964115
Replicate 311.793225958164


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_29530.p1 GENE.R_Transcript_29530~~R_Transcript_29530.p1 ORF type:5prime_partial len:670 (+),score=162.31,AP2|PF00847.16|1e-08,AP2|PF00847.16|0.002,AP2|PF00847.16|0.018,AP2|PF00847.16|1.8e+03,AP2|PF00847.16|0.26 R_Transcript_29530:1-2010(+)
ATTTTTAACCGCATACCCTACGAAAGATTGAATCCTTCCTTCTTTTTCTTTTTTCTTTTTTTTTTTTTAATTCTTATAAATTCCAAAAACCCTTTTGTTATTCGATCAATTCCGTCAAACCCATTAGAAGATTTAGAGTTTTTTTTGCACATTCAACCCTTGAAACACATGAGAAAGTTCAGAGTATTTTGTACAGACCCCGATGCAACAGACTCATCATCAAGTGATGAGGAAGAGCAAAAAAATCATGAGAAAGGAGGAGGAGAAAAACCCAGAAAGTGTTTTTTGAGGGAAGTAACAGTATCAGTGGCCGGAGATTATCCGGAGAAGGAGCCAACTCCGTCACCGGAGCCGACGGAGGCGAAGAAGTATAGAGGGGTCAGGCAAAGGAAGTGGGGAAAGTGGGCTGCTGAGATTAGAGACCCTATCAACAAGGTCAGGATTTGGTTAGGTACTTTTGATTCTGCTCTAGAAGCTTCTGAGGCTTATAATCTTAAGAAACTTGAATTTGATGCTTACCGTTCTTCTAATACTACTGCTACTATGATTGATAAAGATGTTCATGTTGTTGGTAATGAAGAAAATAATGATTCTAAGGAAAATAAAAGTGAAAGAGTAGAGTCACAACAACAACAACCTGAAACGATAATACATGAGAGGAGAATGAACAAGAAGAGTCAGAGTGTTTGTTGTGGTGTGTTTAGGTTGAAATCTGGTAGATGGGGAGCAAGGATTAGGATTCCTGGCACTGGGGGAAGGCTTTGGTTGGGTAATTTTGACACTTCTGAGGAGGCTTTTAGGGCTTACAGTGAGAAAAAGGTTGAGTTTGATGAGAAGTTTAAGAAGGATAAGGTTGGGAAACTCAAGGTTGGTGAATTTGGTGAGAGGGGTGATAAGGGTAAGGATGGGAAGTCGAAGGTTGGTGAGGAAGGGAGAGTTGTTCCGGCTGGTGTTAAGATGACGAAGGAAGGGAAGTGGGGGGCTCAGATTTGGCACCCTAAGTCGAAGACTAGTGTTTGGCTGGGTACTTATAGTACCCCTGAGGAGGCTGGGATTGCTGTTAGTAAGAAGAGGGAGTTGTTCAAGAAGCGGTTTGGGTTTAGGAAGCGGGTTGAGCCTAATCGTTATGGCTTTTGTGAGGGGAGAGGCCCCGTTGGCTTTGATGATAGGGAGGTTGTGATTGCGTTGGCTGCTCCTATGTCGTATGGTAAGGCTGATGGAGTTAAAGAGAAGGCCACGAGTTTTGATTCTGTTGGGGAAATCAACGGGGAGAAGTATGGTGGTCGTGAGCTTCCTCCTGGTGTTAGGTCGACGAAGACTGGCAGGTGGGGTGCTTGGGTCACTCACCCGGTTTCAGGATCTCATTATTGCTTGCGTTCTTATGCGACCATTGAACAGGCTGCTAAAGCTGTCGACATGAAAATGGCAGAGTTTGGCAGGAAGTTTAAGTCTAAGAAGAGGGCTAGACCTGACAATGAAGCTCCTAGAGGTGTTGAACCGAAATGTACTTTCACTCATGGCTCACCAACATCTGTTTTTGAGGCTGAGAATTCTAATGGTGGGACTGTGAGTGCTCCAGAAAGTGAAGAAGGTGGAGCCAGTGTTGATCAAGCTCAGCAAAACAAGACCACTGAAGAGGCTTCCAGTGCTGTCAGCAGGATGAGGGCAAAGCTTCACAGGAAGTTGGAGTGTAGGAAGGCGGCCAGGCCTCAAATGGGAGTTCCTGGTTCTCTAAAATCAGAATGCGATTTTTCTCGGGGAGCTCCCACCACATTTGTTGAGACAAATACTTCGAATGGCAGGATTGTCAATGTTCCTGCAAGTGTAGGAGTTGGAGCATGTGTCAATCAAAATCGAAAACCCCCCCTTGGCATCTCAAGTTTTGAGGGTGCTGCCACATTGGATGTCATCAATGAGTATGGGCAACTCCAGGGTGTGTATAGCAGGCTGGATGATGATCTCTGGTTTAGCGATCCTGATGACAACGTCATGACCACAAGGTTCTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_29530.p1 GENE.R_Transcript_29530~~R_Transcript_29530.p1 ORF type:5prime_partial len:670 (+),score=162.31,AP2|PF00847.16|1e-08,AP2|PF00847.16|0.002,AP2|PF00847.16|0.018,AP2|PF00847.16|1.8e+03,AP2|PF00847.16|0.26 R_Transcript_29530:1-2010(+)
IFNRIPYERLNPSFFFFFLFFFLILINSKNPFVIRSIPSNPLEDLEFFLHIQPLKHMRKFRVFCTDPDATDSSSSDEEEQKNHEKGGGEKPRKCFLREVTVSVAGDYPEKEPTPSPEPTEAKKYRGVRQRKWGKWAAEIRDPINKVRIWLGTFDSALEASEAYNLKKLEFDAYRSSNTTATMIDKDVHVVGNEENNDSKENKSERVESQQQQPETIIHERRMNKKSQSVCCGVFRLKSGRWGARIRIPGTGGRLWLGNFDTSEEAFRAYSEKKVEFDEKFKKDKVGKLKVGEFGERGDKGKDGKSKVGEEGRVVPAGVKMTKEGKWGAQIWHPKSKTSVWLGTYSTPEEAGIAVSKKRELFKKRFGFRKRVEPNRYGFCEGRGPVGFDDREVVIALAAPMSYGKADGVKEKATSFDSVGEINGEKYGGRELPPGVRSTKTGRWGAWVTHPVSGSHYCLRSYATIEQAAKAVDMKMAEFGRKFKSKKRARPDNEAPRGVEPKCTFTHGSPTSVFEAENSNGGTVSAPESEEGGASVDQAQQNKTTEEASSAVSRMRAKLHRKLECRKAARPQMGVPGSLKSECDFSRGAPTTFVETNTSNGRIVNVPASVGVGACVNQNRKPPLGISSFEGAATLDVINEYGQLQGVYSRLDDDLWFSDPDDNVMTTRFF*

Click here to download the sequence:
Link to NCBI Protein BLAST