Transcript Information: R_Transcript_296293.p1


Annotated TAIR IDAT4G10340.1
Annotated Gene Namelight harvesting complex of photosystem II 5
Annotated Gene Symbol(s)LHCB5
Annotation TypeOrtholog
Chromosome Positionchr4:6408200-6409496 | Forward length=280
E-Value3.7E-117
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.10550844482496
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.28307358320515
Replicate 20.51701460904475
Replicate 30.10492260474212
Condition 3: 24 Hour
Replicate 10.13270408802141
Replicate 20.38246113683082
Replicate 30.12651852420172


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_296293.p1 GENE.R_Transcript_296293~~R_Transcript_296293.p1 ORF type:5prime_partial len:173 (+),score=52.83,Chloroa_b-bind|PF00504.17|1.6e-33 R_Transcript_296293:2-520(+)
TCTTACCAGGCGTTTGAGTTGATTCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCAAACTGTGGTCCAGAAGCTGTTTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGGGGTACCTTGAACTACTTCGGGAAACCCATCCCCATCAATCTTATTGTGGCTGTCATTGCTGAGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTTGCAAATGATCCAGACCAAGCTGCACTGCTAAAGGTGAAGGAAATTAAGAATGGCAGACTTGCTATGTTTGCCATGCTTGGTTTCTACTTCCAAGCATATGTCACCGGAGAAGGTCCTGTTGAGAACCTAGCAAAACATCTCAGTGACCCTTTTGGCAACAACTTGCTCACTGTCATTGCCGGGTCTGCTGAGAGAGCTCCAACTCTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_296293.p1 GENE.R_Transcript_296293~~R_Transcript_296293.p1 ORF type:5prime_partial len:173 (+),score=52.83,Chloroa_b-bind|PF00504.17|1.6e-33 R_Transcript_296293:2-520(+)
SYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL*

Click here to download the sequence:
Link to NCBI Protein BLAST