Transcript Information: R_Transcript_296864.p1


Annotated TAIR IDAT1G75850.1
Annotated Gene NameVPS35 Homolog B
Annotated Gene Symbol(s)VPS35B
Annotation TypeOrtholog
Chromosome Positionchr1:28478053-28483874 | Reverse length=790
E-Value2.2E-91
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1175282217175
Replicate 21.2854877805897
Replicate 30.81809777129116
Condition 2: 8 Hour
Replicate 11.3742067062229
Replicate 21.8253781094845
Replicate 31.9448154236129
Condition 3: 24 Hour
Replicate 10.81992168670372
Replicate 21.6879024661156
Replicate 32.1217672910768


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_296864.p1 GENE.R_Transcript_296864~~R_Transcript_296864.p1 ORF type:3prime_partial len:196 (-),score=43.39,Vps35|PF03635.13|2.3e-39 R_Transcript_296864:1-585(-)
ATGGAATATCTTGATAATGATACCAACAAAGTCATGGCCATGGCTATCATACAAAACATTTTAAAGAATGATACTTGCATTTCTACGGCTGATCAGGTGGAGGCATTGTTTAAGTTAATCAAAGGGCTTATTACAGATATAGATGACTCTGTCGATGAGCTTGATGAGGAGGATTTCAAGGAATATCAGAATTCTGTTGCTCGTCTTATACACATGCTATATAATGATGACCCTGATGAAATGTTAAAGATTATATGTACTGTAAGGAGACATATAATGGCTGGAGGACAGAAACGATTACCTTTCACTATTCCATCTCTTGTATTTTCTGCACTCAAGTTAGTCCGGCGGTTTCAAGGTCAAGATGGTGAAGCTGATGGAGAAGAAGCTCCTGCAACACCTAAGAAAATTTTTCAGCTTGTAAATCAGACTGTTGAAGCTCTTTCATGCGTTCCATCTCCTGATCTGGCGTTGAGGCTATATTGGCAATGTGCTGAGGCTGCGAATGATTTTGATCTTGAGCCAATGGCATATGAATTTTTCACCCAGGCCTTTATATTGATTCGAAGGCCCAATCTACTGCCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_296864.p1 GENE.R_Transcript_296864~~R_Transcript_296864.p1 ORF type:3prime_partial len:196 (-),score=43.39,Vps35|PF03635.13|2.3e-39 R_Transcript_296864:1-585(-)
MEYLDNDTNKVMAMAIIQNILKNDTCISTADQVEALFKLIKGLITDIDDSVDELDEEDFKEYQNSVARLIHMLYNDDPDEMLKIICTVRRHIMAGGQKRLPFTIPSLVFSALKLVRRFQGQDGEADGEEAPATPKKIFQLVNQTVEALSCVPSPDLALRLYWQCAEAANDFDLEPMAYEFFTQAFILIRRPNLLP

Click here to download the sequence:
Link to NCBI Protein BLAST