Transcript Information: R_Transcript_29790.p1


Annotated TAIR IDAT5G25630.2
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8947426-8949424 | Forward length=599
E-Value1.4E-195
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.9481571762856
Replicate 27.696393078643
Replicate 39.6488187302121
Condition 2: 8 Hour
Replicate 18.1094665259365
Replicate 211.000691066564
Replicate 310.126380844492
Condition 3: 24 Hour
Replicate 110.593071823716
Replicate 26.8435128068833
Replicate 39.3251474952215


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_29790.p1 GENE.R_Transcript_29790~~R_Transcript_29790.p1 ORF type:complete len:622 (+),score=130.63,PPR_2|PF13041.2|2.4e-06,PPR_2|PF13041.2|2.8e-12,PPR_2|PF13041.2|1.3e-11,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|5.1e-13,PPR_2|PF13041.2|2.2e-09,PPR_2|PF13041.2|1.3e-07,PPR_2|PF13041.2|2.3e-10,PPR_2|PF13041.2|9e-09,PPR_2|PF13041.2|8e-15,PPR_2|PF13041.2|0.00029,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|2.5e-05,PPR_1|PF12854.3|1.8e-07,PPR_1|PF12854.3|6.7e-06,PPR_1|PF12854.3|4.9e-05,PPR_1|PF12854.3|4.6e-06,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|0.0088,PPR_1|PF12854.3|0.003,PPR_1|PF12854.3|8.8e-12,PPR_1|PF12854.3|0.023,PPR_3|PF13812.2|8.5,PPR_3|PF13812.2|44,PPR_3|PF13812.2|0.00074,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|3.8e-05,PPR_3|PF13812.2|5.2e-05,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|0.075,PPR_3|PF13812.2|0.0054,PPR_3|PF13812.2|0.00044,PPR_3|PF13812.2|3.2e-05,PPR_3|PF13812.2|2.4e-05,PPR|PF01535.16|0.54,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|0.00042,PPR|PF01535.16|7.6e-07,PPR|PF01535.16|0.059,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|9.3e-06,PPR|PF01535.16|16,PPR|PF01535.16|0.0027,PPR|PF01535.16|0.00029,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.0036,ATP13|PF12921.3|28,ATP13|PF12921.3|44,ATP13|PF12921.3|1.7e+02,ATP13|PF12921.3|32,ATP13|PF12921.3|3.8 R_Transcript_29790:286-2151(+)
ATGGCTCATTGTAAGGCCATGGTCAAGCACCCGGAAGAAATTTCTGTTATGAAGAGAGAAGTAGTTCAACCATTATCATCAAGGGGACAAAATTTGGATAAGATTCGGTTGCAGCCAGTTGCAGAGTCAGTTTGCTGCCCCTCATGCTTAAAGAAAACCAGTTGCAAAATTGTACGTTCCAGAACAAAACTGATGAACATTTTACTTGAGAAAGGAAAGGCTGAAGACGCTCAGTCAGTTTTTGAGAAGTTAATTGAAGATGGACATAGACCTTCACTTATAACATATACTACTCTCTTAGCTGCCTTCACCATGCAGAAGCGCTTTGAGTTCATATATCCAATTATCTCCCATGTTGAAGAAAATGGATTGAAGCCTGATTCAGTATTCTTCAATGCTGTCATCAATGCTTTTGCAGAATCAGGAAATGTAGAGGAAGCTACGAAAGCCTGTTTGAAAATGGAAGAGAGTGGATATAGACCAACTACGAGCACTTACAACACTTTGATTAAAGGTTTTGGCATTGCTGGTAAACCTGAAGAATCAATGAAACTTCTTGAACAGATGTCCCATAATGGAACTGTGAAACCCAATATCAGGTCATACAATGTGCTAGTTAGGGCCTGGTGTAGCAAGGGGAACATTGCACAGGCTTGTAATGTGGTCTACAAAATGATGGCTGCTGGCTTGGAACCAGATACTGTTACATACAACACTATAGCAACAGCTTATGTTCGAAATGGAGAGACTAAACTTGCTGAAGACTTGATATTAGAGATGCAAAGAAACAATGTACAGGCCAATGAAAGAACTATCAGTATTATAATAAGTGGATATTGTAAAGAAGGTAAAATGAGGGATGCCCTAAGATTTGTGTATAGGATGAAAGGTCTTGGAGTGCACCCCAATCTTGTTATCTTTAATTCACTGATCAAGGGATTTCTGGATATGACAGACAGAGATGGGATTGATGAGGTTTTGAGATTGATGGAAGAAGTTGGAGTGAAACCAGATGTGATCACATGCAGCACTATCATGAATGCATGGAGTGCTACAGGTTTCATGGACAAGTGCCAGGAAATATTTGATAATATGGTGAAGGCTGGAATTCAACCTGATATTCATGCATACAGCATTCTTGCAAAGGGTTATACACGTGCAAGACAGCCGGAAAAAGCTGAGCAACTCTTGAGCCACATGAAAAATATGGGGCTCCATCCAAATGTGGTGATGTTCACAACCATGATCAGTGGATGGTGCAGTACCGGAAGGATGGAAAGTGCATTCAAGGTCTTTGAGAATATGTGTGAATCTGGAATACTTCCAAATCTAAAAACGTTTGAGACCCTGATCTGGGGGTATGGAGAAGCGAAGCAACCATGGAAAGCAGAAGAAATGCTTCAGATGATGGAACAGTATGGCATCCAGCCTGAAGAAAGCACCTTCACACTCGTTGCTGAAGCCTGGCAAGCTGCCGGTTTAACCAAAGAAGTAAGTAGAGTTCTGCTTTCCACAAGAAACAAAGAAATGACTGATCAAAGAGAGAACAGTGAGGAGTTCCCAGGGGCAAGTTTGGAGAGTTTGTATCAGAAACAGCTGTCTGATTCTTCTTACTCAGATGTTTTGCAATCACCAAACGGGTTAATGGCTGATACTAAAGGATCTAGCCTTGGAACTGTGAAAAGTCGATTAGTGGTGAGGGACGCATGTGAAAGTCCTTGGAATGCTGGTGGTAGGTCAATTTCTGCTCCCCAAGCTTGTCGCTATGGGACCATACCACCCATTGTCTGTCAGAAACAGTCTCATGGGAAGCTGGGTTTGTACAGTCACCTTGCTCTTTCATGTACATTGGTGTTCTTGAACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_29790.p1 GENE.R_Transcript_29790~~R_Transcript_29790.p1 ORF type:complete len:622 (+),score=130.63,PPR_2|PF13041.2|2.4e-06,PPR_2|PF13041.2|2.8e-12,PPR_2|PF13041.2|1.3e-11,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|5.1e-13,PPR_2|PF13041.2|2.2e-09,PPR_2|PF13041.2|1.3e-07,PPR_2|PF13041.2|2.3e-10,PPR_2|PF13041.2|9e-09,PPR_2|PF13041.2|8e-15,PPR_2|PF13041.2|0.00029,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|2.5e-05,PPR_1|PF12854.3|1.8e-07,PPR_1|PF12854.3|6.7e-06,PPR_1|PF12854.3|4.9e-05,PPR_1|PF12854.3|4.6e-06,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|0.0088,PPR_1|PF12854.3|0.003,PPR_1|PF12854.3|8.8e-12,PPR_1|PF12854.3|0.023,PPR_3|PF13812.2|8.5,PPR_3|PF13812.2|44,PPR_3|PF13812.2|0.00074,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|3.8e-05,PPR_3|PF13812.2|5.2e-05,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|0.075,PPR_3|PF13812.2|0.0054,PPR_3|PF13812.2|0.00044,PPR_3|PF13812.2|3.2e-05,PPR_3|PF13812.2|2.4e-05,PPR|PF01535.16|0.54,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|0.00042,PPR|PF01535.16|7.6e-07,PPR|PF01535.16|0.059,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|9.3e-06,PPR|PF01535.16|16,PPR|PF01535.16|0.0027,PPR|PF01535.16|0.00029,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.0036,ATP13|PF12921.3|28,ATP13|PF12921.3|44,ATP13|PF12921.3|1.7e+02,ATP13|PF12921.3|32,ATP13|PF12921.3|3.8 R_Transcript_29790:286-2151(+)
MAHCKAMVKHPEEISVMKREVVQPLSSRGQNLDKIRLQPVAESVCCPSCLKKTSCKIVRSRTKLMNILLEKGKAEDAQSVFEKLIEDGHRPSLITYTTLLAAFTMQKRFEFIYPIISHVEENGLKPDSVFFNAVINAFAESGNVEEATKACLKMEESGYRPTTSTYNTLIKGFGIAGKPEESMKLLEQMSHNGTVKPNIRSYNVLVRAWCSKGNIAQACNVVYKMMAAGLEPDTVTYNTIATAYVRNGETKLAEDLILEMQRNNVQANERTISIIISGYCKEGKMRDALRFVYRMKGLGVHPNLVIFNSLIKGFLDMTDRDGIDEVLRLMEEVGVKPDVITCSTIMNAWSATGFMDKCQEIFDNMVKAGIQPDIHAYSILAKGYTRARQPEKAEQLLSHMKNMGLHPNVVMFTTMISGWCSTGRMESAFKVFENMCESGILPNLKTFETLIWGYGEAKQPWKAEEMLQMMEQYGIQPEESTFTLVAEAWQAAGLTKEVSRVLLSTRNKEMTDQRENSEEFPGASLESLYQKQLSDSSYSDVLQSPNGLMADTKGSSLGTVKSRLVVRDACESPWNAGGRSISAPQACRYGTIPPIVCQKQSHGKLGLYSHLALSCTLVFLN*

Click here to download the sequence:
Link to NCBI Protein BLAST