Transcript Information: R_Transcript_300678.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.18914985445304
Replicate 20.10878912132797
Replicate 30
Condition 2: 8 Hour
Replicate 10.12686976656604
Replicate 20.11585949140511
Replicate 30.18809959192111
Condition 3: 24 Hour
Replicate 10.35685710716639
Replicate 20
Replicate 30.11340779630517


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_300678.p1 GENE.R_Transcript_300678~~R_Transcript_300678.p1 ORF type:5prime_partial len:193 (+),score=22.24,DDE_Tnp_4|PF13359.2|3.4e-25,Plant_tran|PF04827.10|1.3e-05 R_Transcript_300678:1-579(+)
GATTTTGATATGTGTTTTACTTTTATTTCGGCCGGTTGGGAAGGATCAGCACATGATACACGTGTATTTATTCATGCAACTACTACACCATCAATGAACTTTCCTCAACCTTCACAAGGTAAATATTATTTGGTGGACAAAGGATATCCCGAAAGAAAAGGATACTTGGTACCATATCCAAAGATAAGATATCATCAATCTCAATTTGAAAATGTGGCACCAAGAAATGCTAGAGAAGCCTTCAACCGTAGTCACTCTTCACTTCGGAGTTGTATCGAAAGGTCATTTGGAGTTTTGAAGAAAAGATGGAGGATTTTACAGAGAATGCCCAAATTTAGTGTTCAAACCCAAATTGACATCATACTTGCTACATTTGCCTTGCATAATTATATCCGCAAAAATTCCGAAGATGATCTGATTTTTACTTCTCTTCAGCAGCATCCAAATTACATACCGCATGAAGAATATGACCAATTGGATGACAACGACAATAATGATGGAAACTCCAATAGACCATCTATTGAGATGAGACAAGTGCGTGATGAAATAGCTACTTTGATATGGAATGCAAAAAACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_300678.p1 GENE.R_Transcript_300678~~R_Transcript_300678.p1 ORF type:5prime_partial len:193 (+),score=22.24,DDE_Tnp_4|PF13359.2|3.4e-25,Plant_tran|PF04827.10|1.3e-05 R_Transcript_300678:1-579(+)
DFDMCFTFISAGWEGSAHDTRVFIHATTTPSMNFPQPSQGKYYLVDKGYPERKGYLVPYPKIRYHQSQFENVAPRNAREAFNRSHSSLRSCIERSFGVLKKRWRILQRMPKFSVQTQIDIILATFALHNYIRKNSEDDLIFTSLQQHPNYIPHEEYDQLDDNDNNDGNSNRPSIEMRQVRDEIATLIWNAKN*

Click here to download the sequence:
Link to NCBI Protein BLAST