Transcript Information: R_Transcript_305376.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value3E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.55734231922805
Replicate 20.80138551207245
Replicate 30.17486059233704
Condition 2: 8 Hour
Replicate 10.18691499959729
Replicate 20
Replicate 30.41568573939817
Condition 3: 24 Hour
Replicate 11.2267530579689
Replicate 20
Replicate 30.83540857583578


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_305376.p1 GENE.R_Transcript_305376~~R_Transcript_305376.p1 ORF type:complete len:131 (+),score=11.71 R_Transcript_305376:46-438(+)
ATGAATGAAATTTTGAATGGTCATGAAAGAAGGTGCTTTAACATGTTTAGAATGAATCAAGTTACAATACATCATTTATGTACGGATTTGAAAGGCAAATATGGTCTAAAACCTTCAAATAGAATTTCCATATTGGAGAAAGTGGGTTTGTTTGTTTATGTTCTTAGTAAAGGAGCTTCCAATACAGATTCTCAAGAGTGTTTTCAACACTCTGGTGAAACGGTGAGTAGAGTTTTTAAAGAAGTTCTGACTGCCATGGATGGCCTCTCAAGAGATATACTAGTGCCAAGAGATCCCGAATTCAAGGAGATTCCACCACAAATTGCAAATGATACTAGATATATGCCACATTTTAAGGTAACTTATTATTTTTCCAATCCAATAATTAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_305376.p1 GENE.R_Transcript_305376~~R_Transcript_305376.p1 ORF type:complete len:131 (+),score=11.71 R_Transcript_305376:46-438(+)
MNEILNGHERRCFNMFRMNQVTIHHLCTDLKGKYGLKPSNRISILEKVGLFVYVLSKGASNTDSQECFQHSGETVSRVFKEVLTAMDGLSRDILVPRDPEFKEIPPQIANDTRYMPHFKVTYYFSNPIIK*

Click here to download the sequence:
Link to NCBI Protein BLAST