Transcript Information: R_Transcript_306713.p1


Annotated TAIR IDAT5G07960.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2542350-2543253 | Forward length=107
E-Value7.3E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1129.08625540049
Replicate 2149.81144080818
Replicate 3143.83780274341
Condition 2: 8 Hour
Replicate 1115.59093002123
Replicate 2138.59717753816
Replicate 3134.58356342863
Condition 3: 24 Hour
Replicate 1173.94158449098
Replicate 2160.54638904132
Replicate 3158.53796908347


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_306713.p1 GENE.R_Transcript_306713~~R_Transcript_306713.p1 ORF type:complete len:111 (+),score=10.57,UPF0139|PF03669.9|5.2e-32 R_Transcript_306713:297-629(+)
ATGTCGTCGCACAGCAATAACAATCCATCATCGGGAAGCGATCCAAGGCAACCAGCAGCAGCAAGGCCATACAAAGCACCTCTTGTAGCTCCTCAAGACCTTCCTGTCGATTACTCCGGCTTCATCGCCGTCCTTTGCGGTGTTCTCGGCGTCATGTTCCGATACAAGCTCGGATCATGGCTAGCTATAATATTTTGTGCGCAGTCTCTTGCAAACATGAGGAATATGGAGAATGATCTTAAGCAGATATCTATGGCCATGATGTTTGCTGTAATGGGATTAGTGACAAACTACATGGGACAACGACCTCCAGCTTCGAGCGCACAAACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_306713.p1 GENE.R_Transcript_306713~~R_Transcript_306713.p1 ORF type:complete len:111 (+),score=10.57,UPF0139|PF03669.9|5.2e-32 R_Transcript_306713:297-629(+)
MSSHSNNNPSSGSDPRQPAAARPYKAPLVAPQDLPVDYSGFIAVLCGVLGVMFRYKLGSWLAIIFCAQSLANMRNMENDLKQISMAMMFAVMGLVTNYMGQRPPASSAQT*

Click here to download the sequence:
Link to NCBI Protein BLAST