Transcript Information: R_Transcript_307359.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value5E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6793825312788
Replicate 22.1693010234033
Replicate 31.1401543599895
Condition 2: 8 Hour
Replicate 11.9389259573611
Replicate 21.5682971427076
Replicate 32.3545075616188
Condition 3: 24 Hour
Replicate 12.216138254258
Replicate 20.96470966489705
Replicate 32.1623599652968


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_307359.p1 GENE.R_Transcript_307359~~R_Transcript_307359.p1 ORF type:complete len:1326 (+),score=262.60,RVT_1|PF00078.23|1.3e-47,zf-RVT|PF13966.2|4.4e+02,zf-RVT|PF13966.2|5.2e-16,RVT_3|PF13456.2|3.7e+03,RVT_3|PF13456.2|4.4e-11,Exo_endo_phos_2|PF14529.2|1.7e-07,Exo_endo_phos|PF03372.19|6.6e-06 R_Transcript_307359:788-4765(+)
ATGCTTTTGGAAACTAAAGCCATTACAGTTCTTAGGGGTTTGGGGTTTGACTTTATTGAATGCTCTTCTGTTGCTGGTAGATCTGGTGGTCTTGCGTTGATGTGGAACAAGAATAGCGGTGCTGAACTAATAGTGAAAACTGATCAAATTTATGTCCTGAGGGTTGTTGATCAGGGTAGGAATGTTACTTGGTTCTTATGCTGTGTTTATAGATCTCCAAATCATGGGGATAAAAATGCTTTTTGGGAGGCGCTTGATTCTCTTATTAGGTTTTTCAATGGGCCTATGTGTATTATTGGGGATTTCAACGACATCCTGGATAGCCATGAAAAGTGGGGTGGGAAAATTGGAAGTAGCTCTTCTAATGGTGGACTCAAAAATCTTGTGAATACTCATGGTCTGTTGGATGTGGGTTTTTCTGGTAATCCATATACATGGTTCCGGAGAAGAGGGGATAGAGTGGTTTTGAAGGAAAGGCTGGATCGTGCTTTATGTACAGATTCTTGGAGGGTTCTGTTTGAAAATGCCTCAGTGCTTCATACAGCCGCCATTAAATCGGACCATTCTCCTATTGTTCTGAAATGTTTCGGAGATTCAGGGAGGGGTCCTACCCCCTTCAGATTTGAAGCTATGTGGGTTAGAGATAGGTCATGTGAGGAGGTGGTGAAAGAGGCTTGGCAGGAGGATATAAGGGGCTCCTTTGGCTTTAGGCTGAAACACAAGCTCAAGGTGACAAAAGTGAAGCTTAAAGATTGGAATCAAACTCATTTTGGAAACATCAAGATGAAAATTAGTAAAGTGGTGAAACAGATTGAGGATTTGCAGCAGGATACTTCTGGTAGAATTAGTGTGGAGGATGAAAAAAACTTGGTCCAAGAACTTACGGAACTTTACGCCAGGGAAGCAACTATGTATAGACAGAAGTCCAGAATTTCACACTTAAAAGAAGGGGACCTCAATACAAAATACTTCCATTTGTCTACTTTACAGCAGAGGAGGAGAAATTGTATTGATAGCCTGAAATTGGAGGATGGCAGCTGGGTTTATAGTGACCAAGAGATAGGAAGAGCATTTGCTGAGTACTTCCAAACCCTGTTTGCATCCTCTGAACCTCCTGAAGCTGATATCAACAATTTGTATGATGTTGTGATTACTGAGGAGAGTAACTCATTCCTCTGTGCTACCCCAGATGAGGAGGAGATTATCGATACCGTCAAGTCTATGGGTGCAACTAAGGCCCCTGGACCCGATGGTTTCCCTCCTATGTTCTATCAACAATTCTGGGAGACTGTGAAAGGTGACGTGATTAGCATGGTGCAAGCTTTCTTCCATTCTGGTTTTATGTTCAAGGAATTGAACCATACTTTTATCACTCTAGTGCCAAAATCAGACAAGGCAATGAAGGTAACAAACTTTAGGCCCATTTCATTATGCAATGTTTCTTACAAAATTATTTCTAAGATTCTTGCTAATAGGCTAAAATCTGTACTGAATGATATTGTGAGTCCTTTTCAGTCTGCTTTTATTCCCGGCCGGTTCATCACAGATAATTCAATCATGATTAATGAGGTTCTACATTGCATGGCTAAAAGCAACTCTAAGGAGGGGCTCATGGCCATCAAAGTTGATATGGCCAAAGCTTATGATAAGATTGAGTGGTGTTTTCTGCTCCAAGTCCTGAGGGCATTGGGTTTTGATGATAAATTTGTGAATTTGGTGGAGCAGTGTATTTCTACCCCTACTTATTCAATGCTGATCAATGGTAGGCCCCAAGGGTTGCATAAACCTAGGAGGGGGATTAGGCAGGGGGATTCTTTATCTCCCTTCCTGTTTGTGATAGCTATGGATGCTTTTTCTAGGCTAATCCAAAGTAAACATAATGAGGGTAAGATCAAAGGGATTACAATTGCTAGAGAGTGCCCAGAAATTACTCATCTTCTATATGCTGATGATCTGGTACTCTTTAGTAGAGCGAATCCCCAAAATGCTATTGAGATTAAGGAGGCTCTGGAGACTCTTGAGATGTGGAGTGGTTTGAGTGCTAATAAGCATAAATCTGGCTTGTTTTTCAGCAAGAGAACTAAGCGAGAGAATATGTTTGTAGTCAAAAGAATTCTGCAGTTCAGGGAAATGGACAAAGATGCTACTTATCTTGGCCTTCCCTTCTTTAGAAAAGAAACTAGAACCAAGAGATTTAATTATATCAAAAATAGATTAAATGCTAGGTTGGAAGGATGGCAGGCCAAACATATGTCTTATGCAGCAAGGGCCACCTTAATCCAGTCAGTTGCCTCTGCTATACCTGTATATGCTATGTCCAGTAACATTCTGACCAAGAAGCTTACGAAGGAATTAGATGCTCTGATGAGAAATTTTTGGTGGGGATTTAAAGATGGGAAAAAAGGGATCTATTTCCTAGCTTGGGAAAACATCTGTAGGCCTGTGGAGGAGGGAGGACTGAACCTGAGAATGATGCAAGATTACAATATGGCACTTCAAGCCAAGCTATTCTGGCAGTTGGCAAAGGAAGATAAGCTCTGGGTGCAGCAATGCCTGTTAAAATACTGTAGAAGGCATGACCCACTTTTTGTGGAACCGGAGTCCATTGACTCTCCTCAATGGAAGGAGATCCTAAAAGCGAGACCTCTGATTGAAAAGGGTCTATGTATGCTGGTGGGAAATGGAAGAAACATTAATATTTGGACTGACCCTTGGGTCCCATACATTGAGGGTTTCAAGCCCACACCCAAAAACCAAGGGGAGGGTGAAGTGTATAAGGTGGACGATCTCATTGAGAATGGTCTTTGGAAAAGGGAGCTGATTTTTAATCTATTTGAGGAAGAATCTGCAATAGCCATAATGAAAATCAGAATATCACAGGAAGAGCTAGGAGATGTGCCTGTTTGGACGAAAGAATCTCATGGTGAATTTACTGTCAAAAGCTGCTATAATGAGGTGGTTAAAGATAAAGATCTTACAAATGCTCAGATGGAAGGAAAATGGTGGAAAAAAATCTGGAAATTGAGAATCCCACAAAGGGTCAAAATGCTCATTTGGAGATGTGCCACTGGGTGTCTCCCTACTAAAGAAGAGATTCATAAACGAGTGGAGAATTATGACAACTGTTGTACTTTCTGCAAAGGTGCAACTGAAACATTTGGGCATTTATTTTTTCACTGTCAAGTTTCTAAACTTCTCTGGTTTAGTTGCTTGAATGTTAGAACAGAAGGGATGGTACAATGGGGGAGGGTACAGTGGATTAAGGCTATCTTGGATCCGGGGGAAGCCCTTAGAATTCCTAAAGGGACAGAAGATAATTTTAGCTCCAAGGCAGGTCTGATGCTGGACTGCATTTGGAAAGCTAGAAACTCTTGTTTGCATGAAGGAAAGGAGCCACAACCTTTAGAGATTATTAAAGAGTTCGACAAAAGATGGGTGGAAGTTCAAGTGATATTTGGCCACCAAGAAGAACTTACACAGAAACAAAAGAGTAAGGTGCAACAGATATCTTTTCAAGGGGAGAATCTCTTCTTTGTTGATGCTGCTGTTAGGCCAGAAGCATCTTTCTGTGCTTGGGTCTGTGTCGATAAGGAGATGAGAGTCAAGGAAGGTGGAGCAGAGAAGGTCGTCTCATCTGACTCGCAATATGCTGAAGTTATAGCTGTGTACCAAGCCCTGCTGATGATCAAGGAAAGAGGGTTGAGGAACAATTATATTTATAGTGATGCGAAGAGGGTTGTAGATCAGGTGACCAGAGGACACCACCTCAGCTGGGAATACAGAGCAGTGCTGAATGAGATAATAGATCTGTGTAAGGGTACTGACACTAAAGTCCGATATGTCCCGAGAAAAGGTAATTGGTCAGCTCATAGTATGGCAGCATGGGCAAGTTTTAGAAATTTTGTAGGCGTTTTGGATGAACCTGAACTTCTATTGTCTGTTAAGAAGAGAGATGTAAGCTTATTTCCAGTTGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_307359.p1 GENE.R_Transcript_307359~~R_Transcript_307359.p1 ORF type:complete len:1326 (+),score=262.60,RVT_1|PF00078.23|1.3e-47,zf-RVT|PF13966.2|4.4e+02,zf-RVT|PF13966.2|5.2e-16,RVT_3|PF13456.2|3.7e+03,RVT_3|PF13456.2|4.4e-11,Exo_endo_phos_2|PF14529.2|1.7e-07,Exo_endo_phos|PF03372.19|6.6e-06 R_Transcript_307359:788-4765(+)
MLLETKAITVLRGLGFDFIECSSVAGRSGGLALMWNKNSGAELIVKTDQIYVLRVVDQGRNVTWFLCCVYRSPNHGDKNAFWEALDSLIRFFNGPMCIIGDFNDILDSHEKWGGKIGSSSSNGGLKNLVNTHGLLDVGFSGNPYTWFRRRGDRVVLKERLDRALCTDSWRVLFENASVLHTAAIKSDHSPIVLKCFGDSGRGPTPFRFEAMWVRDRSCEEVVKEAWQEDIRGSFGFRLKHKLKVTKVKLKDWNQTHFGNIKMKISKVVKQIEDLQQDTSGRISVEDEKNLVQELTELYAREATMYRQKSRISHLKEGDLNTKYFHLSTLQQRRRNCIDSLKLEDGSWVYSDQEIGRAFAEYFQTLFASSEPPEADINNLYDVVITEESNSFLCATPDEEEIIDTVKSMGATKAPGPDGFPPMFYQQFWETVKGDVISMVQAFFHSGFMFKELNHTFITLVPKSDKAMKVTNFRPISLCNVSYKIISKILANRLKSVLNDIVSPFQSAFIPGRFITDNSIMINEVLHCMAKSNSKEGLMAIKVDMAKAYDKIEWCFLLQVLRALGFDDKFVNLVEQCISTPTYSMLINGRPQGLHKPRRGIRQGDSLSPFLFVIAMDAFSRLIQSKHNEGKIKGITIARECPEITHLLYADDLVLFSRANPQNAIEIKEALETLEMWSGLSANKHKSGLFFSKRTKRENMFVVKRILQFREMDKDATYLGLPFFRKETRTKRFNYIKNRLNARLEGWQAKHMSYAARATLIQSVASAIPVYAMSSNILTKKLTKELDALMRNFWWGFKDGKKGIYFLAWENICRPVEEGGLNLRMMQDYNMALQAKLFWQLAKEDKLWVQQCLLKYCRRHDPLFVEPESIDSPQWKEILKARPLIEKGLCMLVGNGRNINIWTDPWVPYIEGFKPTPKNQGEGEVYKVDDLIENGLWKRELIFNLFEEESAIAIMKIRISQEELGDVPVWTKESHGEFTVKSCYNEVVKDKDLTNAQMEGKWWKKIWKLRIPQRVKMLIWRCATGCLPTKEEIHKRVENYDNCCTFCKGATETFGHLFFHCQVSKLLWFSCLNVRTEGMVQWGRVQWIKAILDPGEALRIPKGTEDNFSSKAGLMLDCIWKARNSCLHEGKEPQPLEIIKEFDKRWVEVQVIFGHQEELTQKQKSKVQQISFQGENLFFVDAAVRPEASFCAWVCVDKEMRVKEGGAEKVVSSDSQYAEVIAVYQALLMIKERGLRNNYIYSDAKRVVDQVTRGHHLSWEYRAVLNEIIDLCKGTDTKVRYVPRKGNWSAHSMAAWASFRNFVGVLDEPELLLSVKKRDVSLFPVE*

Click here to download the sequence:
Link to NCBI Protein BLAST