Transcript Information: R_Transcript_307361.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value5E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9224749297573
Replicate 22.2152807266226
Replicate 33.9096061064031
Condition 2: 8 Hour
Replicate 11.0257848775417
Replicate 21.249017449624
Replicate 31.2251281023845
Condition 3: 24 Hour
Replicate 12.7428256889577
Replicate 23.7129489365828
Replicate 33.0055265551442


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_307361.p1 GENE.R_Transcript_307361~~R_Transcript_307361.p1 ORF type:complete len:1289 (+),score=261.73,RVT_1|PF00078.23|2.1e-33,zf-RVT|PF13966.2|4.2e+02,zf-RVT|PF13966.2|5e-16,RVT_3|PF13456.2|3.6e+03,RVT_3|PF13456.2|4.3e-11,Exo_endo_phos_2|PF14529.2|1.7e-07,Exo_endo_phos|PF03372.19|6.4e-06 R_Transcript_307361:302-4168(+)
ATGCTTTTGGAAACTAAAGCCATTACAGTTCTTAGGGGTTTGGGGTTTGACTTTATTGAATGCTCTTCTGTTGCTGGTAGATCTGGTGGTCTTGCGTTGATGTGGAACAAGAATAGCGGTGCTGAACTAATAGTGAAAACTGATCAAATTTATGTCCTGAGGGTTGTTGATCAGGGTAGGAATGTTACTTGGTTCTTATGCTGTGTTTATAGATCTCCAAATCATGGGGATAAAAATGCTTTTTGGGAGGCGCTTGATTCTCTTATTAGGTTTTTCAATGGGCCTATGTGTATTATTGGGGATTTCAACGACATCCTGGATAGCCATGAAAAGTGGGGTGGGAAAATTGGAAGTAGCTCTTCTAATGGTGGACTCAAAAATCTTGTGAATACTCATGGTCTGTTGGATGTGGGTTTTTCTGGTAATCCATATACATGGTTCCGGAGAAGAGGGGATAGAGTGGTTTTGAAGGAAAGGCTGGATCGTGCTTTATGTACAGATTCTTGGAGGGTTCTGTTTGAAAATGCCTCAGTGCTTCATACAGCCGCCATTAAATCGGACCATTCTCCTATTGTTCTGAAATGTTTCGGAGATTCAGGGAGGGGTCCTACCCCCTTCAGATTTGAAGCTATGTGGGTTAGAGATAGGTCATGTGAGGAGGTGGTGAAAGAGGCTTGGCAGGAGGATATAAGGGGCTCCTTTGGCTTTAGGCTGAAACACAAGCTCAAGGTGACAAAAGTGAAGCTTAAAGATTGGAATCAAACTCATTTTGGAAACATCAAGATGAAAATTAGTAAAGTGGTGAAACAGATTGAGGATTTGCAGCAGGATACTTCTGGTAGAATTAGTGTGGAGGATGAAAAAAACTTGGTCCAAGAACTTACGGAACTTTACGCCAGGGAAGCAACTATGTATAGACAGAAGTCCAGAATTTCACACTTAAAAGAAGGGGACCTCAATACAAAATACTTCCATTTGTCTACTTTACAGCAGAGGAGGAGAAATTGTATTGATAGCCTGAAATTGGAGGATGGCAGCTGGGTTTATAGTGACCAAGAGATAGGAAGAGCATTTGCTGAGTACTTCCAAACCCTGTTTGCATCCTCTGAACCTCCTGAAGCTGATATCAACAATTTGTATGATGTTGTGATTACTGAGGAGAGTAACTCATTCCTCTGTGCTACCCCAGATGAGGAGGAGATTATCGATACCGTCAAGTCTATGGGTGCAACTAAGGCCCCTGGACCCGATGGTTTCCCTCCTATGTTCTATCAACAATTCTGGGAGACTGTGAAAGGTGACGTGATTAGCATGGTGCAAGCTTTCTTCCATTCTGGTTTTATGTTCAAGGAATTGAACCATACTTTTATCACTCTAGTGCCAAAATCAGACAAGGCAATGAAGTCTGCTTTTATTCCCGGCCGGTTCATCACAGATAATTCAATCATGATTAATGAGGTTCTACATTGCATGGCTAAAAGCAACTCTAAGGAGGGGCTCATGGCCATCAAAGTTGATATGGCCAAAGCTTATGATAAGATTGAGTGGTGTTTTCTGCTCCAAGTCCTGAGGGCATTGGGTTTTGATGATAAATTTGTGAATTTGGTGGAGCAGTGTATTTCTACCCCTACTTATTCAATGCTGATCAATGGTAGGCCCCAAGGGTTGCATAAACCTAGGAGGGGGATTAGGCAGGGGGATTCTTTATCTCCCTTCCTGTTTGTGATAGCTATGGATGCTTTTTCTAGGCTAATCCAAAGTAAACATAATGAGGGTAAGATCAAAGGGATTACAATTGCTAGAGAGTGCCCAGAAATTACTCATCTTCTATATGCTGATGATCTGGTACTCTTTAGTAGAGCGAATCCCCAAAATGCTATTGAGATTAAGGAGGCTCTGGAGACTCTTGAGATGTGGAGTGGTTTGAGTGCTAATAAGCATAAATCTGGCTTGTTTTTCAGCAAGAGAACTAAGCGAGAGAATATGTTTGTAGTCAAAAGAATTCTGCAGTTCAGGGAAATGGACAAAGATGCTACTTATCTTGGCCTTCCCTTCTTTAGAAAAGAAACTAGAACCAAGAGATTTAATTATATCAAAAATAGATTAAATGCTAGGTTGGAAGGATGGCAGGCCAAACATATGTCTTATGCAGCAAGGGCCACCTTAATCCAGTCAGTTGCCTCTGCTATACCTGTATATGCTATGTCCAGTAACATTCTGACCAAGAAGCTTACGAAGGAATTAGATGCTCTGATGAGAAATTTTTGGTGGGGATTTAAAGATGGGAAAAAAGGGATCTATTTCCTAGCTTGGGAAAACATCTGTAGGCCTGTGGAGGAGGGAGGACTGAACCTGAGAATGATGCAAGATTACAATATGGCACTTCAAGCCAAGCTATTCTGGCAGTTGGCAAAGGAAGATAAGCTCTGGGTGCAGCAATGCCTGTTAAAATACTGTAGAAGGCATGACCCACTTTTTGTGGAACCGGAGTCCATTGACTCTCCTCAATGGAAGGAGATCCTAAAAGCGAGACCTCTGATTGAAAAGGGTCTATGTATGCTGGTGGGAAATGGAAGAAACATTAATATTTGGACTGACCCTTGGGTCCCATACATTGAGGGTTTCAAGCCCACACCCAAAAACCAAGGGGAGGGTGAAGTGTATAAGGTGGACGATCTCATTGAGAATGGTCTTTGGAAAAGGGAGCTGATTTTTAATCTATTTGAGGAAGAATCTGCAATAGCCATAATGAAAATCAGAATATCACAGGAAGAGCTAGGAGATGTGCCTGTTTGGACGAAAGAATCTCATGGTGAATTTACTGTCAAAAGCTGCTATAATGAGGTGGTTAAAGATAAAGATCTTACAAATGCTCAGATGGAAGGAAAATGGTGGAAAAAAATCTGGAAATTGAGAATCCCACAAAGGGTCAAAATGCTCATTTGGAGATGTGCCACTGGGTGTCTCCCTACTAAAGAAGAGATTCATAAACGAGTGGAGAATTATGACAACTGTTGTACTTTCTGCAAAGGTGCAACTGAAACATTTGGGCATTTATTTTTTCACTGTCAAGTTTCTAAACTTCTCTGGTTTAGTTGCTTGAATGTTAGAACAGAAGGGATGGTACAATGGGGGAGGGTACAGTGGATTAAGGCTATCTTGGATCCGGGGGAAGCCCTTAGAATTCCTAAAGGGACAGAAGATAATTTTAGCTCCAAGGCAGGTCTGATGCTGGACTGCATTTGGAAAGCTAGAAACTCTTGTTTGCATGAAGGAAAGGAGCCACAACCTTTAGAGATTATTAAAGAGTTCGACAAAAGATGGGTGGAAGTTCAAGTGATATTTGGCCACCAAGAAGAACTTACACAGAAACAAAAGAGTAAGGTGCAACAGATATCTTTTCAAGGGGAGAATCTCTTCTTTGTTGATGCTGCTGTTAGGCCAGAAGCATCTTTCTGTGCTTGGGTCTGTGTCGATAAGGAGATGAGAGTCAAGGAAGGTGGAGCAGAGAAGGTCGTCTCATCTGACTCGCAATATGCTGAAGTTATAGCTGTGTACCAAGCCCTGCTGATGATCAAGGAAAGAGGGTTGAGGAACAATTATATTTATAGTGATGCGAAGAGGGTTGTAGATCAGGTGACCAGAGGACACCACCTCAGCTGGGAATACAGAGCAGTGCTGAATGAGATAATAGATCTGTGTAAGGGTACTGACACTAAAGTCCGATATGTCCCGAGAAAAGGTAATTGGTCAGCTCATAGTATGGCAGCATGGGCAAGTTTTAGAAATTTTGTAGGCGTTTTGGATGAACCTGAACTTCTATTGTCTGTTAAGAAGAGAGATGTAAGCTTATTTCCAGTTGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_307361.p1 GENE.R_Transcript_307361~~R_Transcript_307361.p1 ORF type:complete len:1289 (+),score=261.73,RVT_1|PF00078.23|2.1e-33,zf-RVT|PF13966.2|4.2e+02,zf-RVT|PF13966.2|5e-16,RVT_3|PF13456.2|3.6e+03,RVT_3|PF13456.2|4.3e-11,Exo_endo_phos_2|PF14529.2|1.7e-07,Exo_endo_phos|PF03372.19|6.4e-06 R_Transcript_307361:302-4168(+)
MLLETKAITVLRGLGFDFIECSSVAGRSGGLALMWNKNSGAELIVKTDQIYVLRVVDQGRNVTWFLCCVYRSPNHGDKNAFWEALDSLIRFFNGPMCIIGDFNDILDSHEKWGGKIGSSSSNGGLKNLVNTHGLLDVGFSGNPYTWFRRRGDRVVLKERLDRALCTDSWRVLFENASVLHTAAIKSDHSPIVLKCFGDSGRGPTPFRFEAMWVRDRSCEEVVKEAWQEDIRGSFGFRLKHKLKVTKVKLKDWNQTHFGNIKMKISKVVKQIEDLQQDTSGRISVEDEKNLVQELTELYAREATMYRQKSRISHLKEGDLNTKYFHLSTLQQRRRNCIDSLKLEDGSWVYSDQEIGRAFAEYFQTLFASSEPPEADINNLYDVVITEESNSFLCATPDEEEIIDTVKSMGATKAPGPDGFPPMFYQQFWETVKGDVISMVQAFFHSGFMFKELNHTFITLVPKSDKAMKSAFIPGRFITDNSIMINEVLHCMAKSNSKEGLMAIKVDMAKAYDKIEWCFLLQVLRALGFDDKFVNLVEQCISTPTYSMLINGRPQGLHKPRRGIRQGDSLSPFLFVIAMDAFSRLIQSKHNEGKIKGITIARECPEITHLLYADDLVLFSRANPQNAIEIKEALETLEMWSGLSANKHKSGLFFSKRTKRENMFVVKRILQFREMDKDATYLGLPFFRKETRTKRFNYIKNRLNARLEGWQAKHMSYAARATLIQSVASAIPVYAMSSNILTKKLTKELDALMRNFWWGFKDGKKGIYFLAWENICRPVEEGGLNLRMMQDYNMALQAKLFWQLAKEDKLWVQQCLLKYCRRHDPLFVEPESIDSPQWKEILKARPLIEKGLCMLVGNGRNINIWTDPWVPYIEGFKPTPKNQGEGEVYKVDDLIENGLWKRELIFNLFEEESAIAIMKIRISQEELGDVPVWTKESHGEFTVKSCYNEVVKDKDLTNAQMEGKWWKKIWKLRIPQRVKMLIWRCATGCLPTKEEIHKRVENYDNCCTFCKGATETFGHLFFHCQVSKLLWFSCLNVRTEGMVQWGRVQWIKAILDPGEALRIPKGTEDNFSSKAGLMLDCIWKARNSCLHEGKEPQPLEIIKEFDKRWVEVQVIFGHQEELTQKQKSKVQQISFQGENLFFVDAAVRPEASFCAWVCVDKEMRVKEGGAEKVVSSDSQYAEVIAVYQALLMIKERGLRNNYIYSDAKRVVDQVTRGHHLSWEYRAVLNEIIDLCKGTDTKVRYVPRKGNWSAHSMAAWASFRNFVGVLDEPELLLSVKKRDVSLFPVE*

Click here to download the sequence:
Link to NCBI Protein BLAST