Transcript Information: R_Transcript_3083.p1


Annotated TAIR IDAT1G77360.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:29071983-29073536 | Reverse length=517
E-Value7E-52
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.923035045651
Replicate 27.0886592231171
Replicate 38.2800501035634
Condition 2: 8 Hour
Replicate 17.6827209284017
Replicate 210.380372671229
Replicate 313.488811561939
Condition 3: 24 Hour
Replicate 113.816808753554
Replicate 211.412078912189
Replicate 315.220990965751


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_3083.p1 GENE.R_Transcript_3083~~R_Transcript_3083.p1 ORF type:5prime_partial len:545 (+),score=95.21,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|8.1e-05,PPR_2|PF13041.2|0.3,PPR_2|PF13041.2|0.066,PPR_2|PF13041.2|1.1e-09,PPR_2|PF13041.2|2.7e-08,PPR_2|PF13041.2|20,PPR_2|PF13041.2|0.2,PPR|PF01535.16|0.0038,PPR|PF01535.16|0.012,PPR|PF01535.16|2.4,PPR|PF01535.16|1.4,PPR|PF01535.16|47,PPR|PF01535.16|0.00025,PPR|PF01535.16|0.0021,PPR|PF01535.16|2,PPR|PF01535.16|79,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|0.044,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.032,PPR_3|PF13812.2|7.3e+02,PPR_3|PF13812.2|25,PPR_3|PF13812.2|0.062,PPR_3|PF13812.2|0.97,PPR_3|PF13812.2|2.1e+02,PPR_1|PF12854.3|7.2e+03,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|0.0052,PPR_1|PF12854.3|0.00054,PPR_1|PF12854.3|5.1e+02,PPR_1|PF12854.3|0.00066,PPR_1|PF12854.3|0.0069,PPR_1|PF12854.3|7.5e+02 R_Transcript_3083:1-1635(+)
GGTTATTTACATGAAAGATTCCATCTTTCATCACAAAAACACAATTCCTTACTGATTTTCCAGAGTTTCCCTCTCAAAAAAAAAAAAAAAACCCTTGTAAATGACACCATGAGCAAGCTCAACAAGCGGGCATACGACCCGGTATCCTCAACATCAATATCGCCACCTTCATCATCATACAAGAAACACCATCATGATCATGGTGGAAGCCCTTATACTCAAAGTCATGAACTGGGTAAGCGCAAGATCCCATCTTTTACTTCATATCTTGAAACCCTCAATTTACCCCCTAAAATCAAATTACTATGTGAAGTTGTAGCCAACACTAGTGGTTCATCTATTGAAAAAGTTTTAGATGAAACTGGTTTAAGGGTATCTCAAGAAGACGTTGAGCATGTCCTTAAATTGTCATATGGGTACCCTTCAACTGCAGTCAAGTTTTTCAGGTGGGCTGGGTACCAATTCCAATTGAATGATAGACATAGCCCTTATGCTTGGAATTTAGTTATTGATATGTTGGGTAAGAATTCCATGTTTGATGCTATGTGGGATGTTATTAAGTCTATGAAGAAAGAAAGGCTTCTTTCTCTGGCTACTTTTGCTTCTGTTTTTAGTAGTTATGTCACCAGTGGTCGTGTCGACGAGGCATTCATGACCTTTGAGGTTATGGATCGGTATGGTATTCCTAGGGACATTGTCGCTTTGAACTCGCTCTTGAGTGCTATTTGTAGGGATGGAAGGACAGGGAGAGCGGACGAGTTTTTGAGGCTGGCTAAGGATAAGATTAGACCGGATGCTGATACGTATGCCATCTTGTTGGAGGGTTGGGAGAGTGAGGGGAATGTAGATAGCGCTAGGCAGACCTTTGGGGAGATGGTGGTTGAAGTTGGATGGGATCCGAGGAATGTGCCTGCTTATGACTCGTTTTTGTGCGTGTTGATTAAGGGACCAAAAGGGTTTCATGAGGCCTTGAAGTTCTTGAATACCATGAAAGAAAGGAGGTGTTCACCCGGGATTAAGTTTTTTGGGTTTGCCTTGGAGGATTGTGTGAGGAAAACTGATGCTCGAGGAGCTGCTTTGCTGTGGGAAGCAATGACAGTGAGGAGCGAGTTTAGACCCAATAGACACATGTATAATATGATGATTTCCTTACATTGCCAGCTTTCTAACTTTGATATAGCTAGGAAGTATTTGGATGAGATGGTATGCTATGGAGTTCTTCCTGATACTCAGAGTTATAATACATTACTTCAATTCCTGCTTAAAAGCCGAAAGCTACGAGACGCGTCTTCTATTTTTACTGAGATGGTGAAGAATGAGTGTACTCCAAACCAAGCGAATTGCACAGCTGCAGTTCGACTTTACGTGGATTCTGGGGATCCTTACATGGCTATTAAGGTATGGAAATACATGGTCGAGAACTATGTTTCTGAATTGGAAGAAACTGGGAACTTTTTGGTCTGTGGCCTTCGTGACTGCAACAGAGTTCAAGAAGCTGTAAAATATGCTGAAGATATGATTGATCGCAGGATAAAGTTGAGCTCTTCTTCACTGACAAAATTGAAGCAGAGTCTGACTAAGGCAGGAAAGGCTTCTGTTTATGATGAATTGTTGAAAAAGTGGAAAATCCGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_3083.p1 GENE.R_Transcript_3083~~R_Transcript_3083.p1 ORF type:5prime_partial len:545 (+),score=95.21,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|8.1e-05,PPR_2|PF13041.2|0.3,PPR_2|PF13041.2|0.066,PPR_2|PF13041.2|1.1e-09,PPR_2|PF13041.2|2.7e-08,PPR_2|PF13041.2|20,PPR_2|PF13041.2|0.2,PPR|PF01535.16|0.0038,PPR|PF01535.16|0.012,PPR|PF01535.16|2.4,PPR|PF01535.16|1.4,PPR|PF01535.16|47,PPR|PF01535.16|0.00025,PPR|PF01535.16|0.0021,PPR|PF01535.16|2,PPR|PF01535.16|79,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|0.044,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.032,PPR_3|PF13812.2|7.3e+02,PPR_3|PF13812.2|25,PPR_3|PF13812.2|0.062,PPR_3|PF13812.2|0.97,PPR_3|PF13812.2|2.1e+02,PPR_1|PF12854.3|7.2e+03,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|0.0052,PPR_1|PF12854.3|0.00054,PPR_1|PF12854.3|5.1e+02,PPR_1|PF12854.3|0.00066,PPR_1|PF12854.3|0.0069,PPR_1|PF12854.3|7.5e+02 R_Transcript_3083:1-1635(+)
GYLHERFHLSSQKHNSLLIFQSFPLKKKKKTLVNDTMSKLNKRAYDPVSSTSISPPSSSYKKHHHDHGGSPYTQSHELGKRKIPSFTSYLETLNLPPKIKLLCEVVANTSGSSIEKVLDETGLRVSQEDVEHVLKLSYGYPSTAVKFFRWAGYQFQLNDRHSPYAWNLVIDMLGKNSMFDAMWDVIKSMKKERLLSLATFASVFSSYVTSGRVDEAFMTFEVMDRYGIPRDIVALNSLLSAICRDGRTGRADEFLRLAKDKIRPDADTYAILLEGWESEGNVDSARQTFGEMVVEVGWDPRNVPAYDSFLCVLIKGPKGFHEALKFLNTMKERRCSPGIKFFGFALEDCVRKTDARGAALLWEAMTVRSEFRPNRHMYNMMISLHCQLSNFDIARKYLDEMVCYGVLPDTQSYNTLLQFLLKSRKLRDASSIFTEMVKNECTPNQANCTAAVRLYVDSGDPYMAIKVWKYMVENYVSELEETGNFLVCGLRDCNRVQEAVKYAEDMIDRRIKLSSSSLTKLKQSLTKAGKASVYDELLKKWKIR*

Click here to download the sequence:
Link to NCBI Protein BLAST