Transcript Information: R_Transcript_308405.p1


Annotated TAIR IDAT2G19070.1
Annotated Gene Namespermidine hydroxycinnamoyl transferase
Annotated Gene Symbol(s)SHT
Annotation TypeHomolog
Chromosome Positionchr2:8260185-8261958 | Reverse length=451
E-Value5E-102
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9883399732809
Replicate 21.5552815123184
Replicate 31.8465126166833
Condition 2: 8 Hour
Replicate 11.493691107893
Replicate 21.0717633997954
Replicate 32.2145755876725
Condition 3: 24 Hour
Replicate 11.5505272855312
Replicate 21.3454188429982
Replicate 32.0027965072978


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_308405.p1 GENE.R_Transcript_308405~~R_Transcript_308405.p1 ORF type:complete len:459 (+),score=97.16,Transferase|PF02458.11|1.7e-101 R_Transcript_308405:315-1691(+)
ATGGTAGTGACAACCAAGGCTAGTTATGTAGTAAAACCAGCAGAATCAACATGGAATGGAACCCTTCCTCTATCAGAATTAGATCAAGTTGGAATGGTAAGACACACACTTTTCATATACATATACAAGAGCCCAACAAAAAGCCATGATCAACCAAACACTAACAATCAAACCATCTTTGAAAAACTTAAGGATTCCTTGAGCCATGTTCTTGTCCCATTTTATCCTCTAGCAGGCCGTTTGCATTGGCTTGAGGGAGGGAGATTAGAGCTCAAGTGTAATGCCATGGGGGCAGAAATGATTGAAGCTCAATCTGAGTTGAAATTAAGTGATTTTGGTGATTTCTCTCATCATGATTCCATGTTAGAAGAACTTGTTCCTGTGGTGGATTTTTTGAAGCAACCATTCCATGAGATACCACTTCTCTTGGTCCAGGTCACTCAATTTCAATGTGGTGGCTTGAGTCTTGGCATAGCAGCTTCCCATGTGATTGTTGATGCCAAAGCCATCTTCCATTTTACTGATGAATGGGCTAGGCTCACTCGAGGGGAGCCATTGGAGGCTTTACCTTACATGGACCGTGGAATCCTTCAACCTCCATGCAATCACAAAGCTATCATTCAAAAGGAAATTGTTCAAACTATGACTCAACCTTCTAAGCTTATGATCAAAGAAGTTGAGGCAACAAATGAAGATGTAAGTGATAAGAAGAAGTTATCAGCTGCCAAATTGCTCTTGACAAAAACTCAGATTGACATGCTTAAGAAGGTTGCTAATGGTGGTGATGGAGATGGTGTTATAAGACCATACACTCGTTTTGAAATTATTGCAACTCATATATGGAGATGTGTATCTAAGGCACGACATCATGGAAGCCAGCAACCTACAGATTTAGTTACCATTGTTAACTCTAGGAGTCGCATGAATCCACCACTACCACCAAGTTACTTTGGCAATGCAATTGTTGCAGTGCCAACATCTAGCAAAGCAGGGGAGCTCATTTCAAGACCTTTGAGCGAAGTTTGCAGTAAAATAAGAGAAGCAATAGAGATGGTGAATAATGAGTATGTATGGTCAATGATTGAGTACCTTAAGAGTCAAGAAAGCTTGTGCCCATTTCAAGATCTTCAAGGCTTTTCCTTGGAAAACCCTAATGTTGAAATTATAAGTTGGTTAAATTTATCAGCTCGAAACAAAGACTTTGGTTGGGGAAAGGAGATCTACTTTGGATTGGGAAAACATCTCTGGGATGCTGAGTTCTTGATTTTGCCTGGGTTCGATGATGCCGATGGTTCAATATTGGTTGATGCATGCTTGCAAGCTCATCATATGGATGAATTCAAGAATTATTTTTATGAGGATATATTCAATATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_308405.p1 GENE.R_Transcript_308405~~R_Transcript_308405.p1 ORF type:complete len:459 (+),score=97.16,Transferase|PF02458.11|1.7e-101 R_Transcript_308405:315-1691(+)
MVVTTKASYVVKPAESTWNGTLPLSELDQVGMVRHTLFIYIYKSPTKSHDQPNTNNQTIFEKLKDSLSHVLVPFYPLAGRLHWLEGGRLELKCNAMGAEMIEAQSELKLSDFGDFSHHDSMLEELVPVVDFLKQPFHEIPLLLVQVTQFQCGGLSLGIAASHVIVDAKAIFHFTDEWARLTRGEPLEALPYMDRGILQPPCNHKAIIQKEIVQTMTQPSKLMIKEVEATNEDVSDKKKLSAAKLLLTKTQIDMLKKVANGGDGDGVIRPYTRFEIIATHIWRCVSKARHHGSQQPTDLVTIVNSRSRMNPPLPPSYFGNAIVAVPTSSKAGELISRPLSEVCSKIREAIEMVNNEYVWSMIEYLKSQESLCPFQDLQGFSLENPNVEIISWLNLSARNKDFGWGKEIYFGLGKHLWDAEFLILPGFDDADGSILVDACLQAHHMDEFKNYFYEDIFNI*

Click here to download the sequence:
Link to NCBI Protein BLAST