Transcript Information: R_Transcript_309045.p1


Annotated TAIR IDAT4G38440.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:17989115-17994549 | Forward length=1465
E-Value2E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.33491671476548
Replicate 20.38525321864767
Replicate 31.05076777964
Condition 2: 8 Hour
Replicate 10.67392288845629
Replicate 20.41029140993001
Replicate 30.33305707560343
Condition 3: 24 Hour
Replicate 10.84248833863134
Replicate 20.2023418246842
Replicate 30.80321852062009


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_309045.p1 GENE.R_Transcript_309045~~R_Transcript_309045.p1 ORF type:internal len:109 (+),score=10.69 R_Transcript_309045:3-326(+)
AGGATGAATGAGCATTCGACAGAACAATGTGGGATGCACTTTTCCATTGAAAAGTTGTGTTGTCTCAGACATGACTCGGATACTGAAGTGTCCCTGGCTTCTGTGTGGTGTCTTCATGGAATATTCCGTGTAATAGTTTCTATTGATTGTTTCGTTCAAATGATCAGGGACAAGGATGGACTTGTGCGTTTCTGTGGAAATGAGTGCTACAGTGGAATACTTGAACAGGGCATAATTAAGGGTTCAATTGGCCGGTGGAGAACTGTGATTTCTGAATTCATGAGGTTAGTCACATCAAAATGGAACTTAGTGAATAGTATTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_309045.p1 GENE.R_Transcript_309045~~R_Transcript_309045.p1 ORF type:internal len:109 (+),score=10.69 R_Transcript_309045:3-326(+)
RMNEHSTEQCGMHFSIEKLCCLRHDSDTEVSLASVWCLHGIFRVIVSIDCFVQMIRDKDGLVRFCGNECYSGILEQGIIKGSIGRWRTVISEFMRLVTSKWNLVNSIE

Click here to download the sequence:
Link to NCBI Protein BLAST