Transcript Information: R_Transcript_30937.p1


Annotated TAIR IDAT5G54080.1
Annotated Gene Namehomogentisate 1,2-dioxygenase
Annotated Gene Symbol(s)HGO
Annotation TypeOrtholog
Chromosome Positionchr5:21945920-21948070 | Forward length=461
E-Value6.1E-277
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.925657065382
Replicate 217.090011966754
Replicate 323.294166561838
Condition 2: 8 Hour
Replicate 128.109565890812
Replicate 248.834653154217
Replicate 354.493207359301
Condition 3: 24 Hour
Replicate 123.491709721372
Replicate 219.910349992128
Replicate 324.34023819304


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_30937.p1 GENE.R_Transcript_30937~~R_Transcript_30937.p1 ORF type:complete len:473 (+),score=84.79,HgmA|PF04209.9|1.5e-204 R_Transcript_30937:312-1730(+)
ATGGCTAAGGCAGAAGCTTCAACAATGGTGGAAGTTGAGAAGTTTGCAGAAGATTTGGAGTACCTGAGTGGATTTGGGAACCATTTGTCATCAGAAGCTATGGAAGGAGCTCTACCAGTTGGGCAGAACAACCCTCTGATATGCCCTTATGGCCTTTATGCTGAGCAGATTTCTGGCACTTCCTTCACTGCTCCTCGCAAGCTCAACCTCCGAAGTTGGTTATACCGTATTAAGCCATCAGTTACACATGAACCATTCAAGCCTTGTGTTCCTGGCAATGAGAAACTAGTTGCAGAATTTAACCAGTCCAACAGCTCTGCTAACCCAACCCAACTACGGTGGAAGCCTATAGATATTCCTGAAGATCCAACTGATTTTATTGATGGTTTGCAAACTATTTGTGGAGCAGGCAGTTCGTATCTCCGGCATGGATATGCAGTTCACATGTACACTGCCAACAAATCAATGGATAACTGTGCCTTCTGCAATGCTGATGGTGATTTCTTGTTCGTCCCTCAAAAAGGAAGTACGTACCGTCCTTCTGTTCACACATTGTGGTTTACAGGGCTATGGATCACTACTGAGTGTGGAAGATTGCAAGTTTCTCCTGGTGAAGTTGCTGTTGTGCCTCAAGGATTTCGTTTTGCTATCAGCTTGCCTGATGGTCCATCACGTGGTTATGTTGCTGAGATATTTGGGGCGCATTTTCATCTTCCAGATCTGGGCCCAATAGGTGCGAATGGTCTAGCTTCTGCAAGACATTTCCTCGTGCCTACTGCTTGGTTTGACAAGAGTACCTGTCCAAATTACACAATTGTACAAAAATATGGCGGGGAGTTATTCACCGCAAAACAAGATTTCTCTCCCTTCAATGTGGTTGCTTGGCATGGTAACTATGTCCCATGTAAGTATGATTTGAGCAAGTTTTGTCCTTTCAATACTGTATTGGTGGATCACGGGGATCCATCGATAAATACAGTGCTAACTGCCCCGACAGAGAAGCCTGGTGTGGCATTACTTGATTTTGTTATTTTCCCCCCAAGGTGGCTGGTTGCTGAGCACACCTTCAGACCTCCTTATTACCACCGCAATTGTATGAGTGAATTTATGGGTCTGATTTACGGTGATTATGAGGCAAAGGCTGACGGGTTTCTCCCTGGGGGTGCGAGTCTACATAGTTGCATGACACCACATGGTCCAGATACTAAGACTTATGAGGCAAATATTGCCCGAGGGGAGAACACAGGACCAAGCAAAATTACAGACACTATGGCATTCATGTTTGAATCATATCTCATCCCTCGAGTTTGCCCGTGGGCTCTCGAGTCTCCGTTCCTGGATGAGGATTACTACCAGTGCTGGATTGGACTGAAATCTCATTTTGGTGAAGAGCAAACTTCTAATAGCTCCACTGTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_30937.p1 GENE.R_Transcript_30937~~R_Transcript_30937.p1 ORF type:complete len:473 (+),score=84.79,HgmA|PF04209.9|1.5e-204 R_Transcript_30937:312-1730(+)
MAKAEASTMVEVEKFAEDLEYLSGFGNHLSSEAMEGALPVGQNNPLICPYGLYAEQISGTSFTAPRKLNLRSWLYRIKPSVTHEPFKPCVPGNEKLVAEFNQSNSSANPTQLRWKPIDIPEDPTDFIDGLQTICGAGSSYLRHGYAVHMYTANKSMDNCAFCNADGDFLFVPQKGSTYRPSVHTLWFTGLWITTECGRLQVSPGEVAVVPQGFRFAISLPDGPSRGYVAEIFGAHFHLPDLGPIGANGLASARHFLVPTAWFDKSTCPNYTIVQKYGGELFTAKQDFSPFNVVAWHGNYVPCKYDLSKFCPFNTVLVDHGDPSINTVLTAPTEKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGDYEAKADGFLPGGASLHSCMTPHGPDTKTYEANIARGENTGPSKITDTMAFMFESYLIPRVCPWALESPFLDEDYYQCWIGLKSHFGEEQTSNSSTV*

Click here to download the sequence:
Link to NCBI Protein BLAST