Transcript Information: R_Transcript_311091.p1


Annotated TAIR IDAT2G22620.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:9604902-9610156 | Reverse length=677
E-Value9.8E-249
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12854197855436
Replicate 20.11089595290298
Replicate 30.12098629012052
Condition 2: 8 Hour
Replicate 10.21554458580322
Replicate 20.078735499440794
Replicate 30.15978530475693
Condition 3: 24 Hour
Replicate 10.24251204817997
Replicate 20.46595617374459
Replicate 30.11560407405051


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_311091.p1 GENE.R_Transcript_311091~~R_Transcript_311091.p1 ORF type:5prime_partial len:568 (+),score=66.46,CBM-like|PF14683.2|8.5e+02,CBM-like|PF14683.2|4.1e-54,Rhamnogal_lyase|PF06045.7|1.1e-48,fn3_3|PF14686.2|7.9e-27,fn3_3|PF14686.2|2.8e+02,CarboxypepD_reg|PF13620.2|5e-05,CarboxypepD_reg|PF13620.2|1.6e+03 R_Transcript_311091:3-1706(+)
GAAAAAGACGAACCAAATGAAACAGATATTGAGGGAACAAGCTTTAAAATCATAAGCCAGACTGAAGATCACGTAGAGATCTCATTTATTTCTCCGAAGAGTACATCCATCCCGCTAGAAGTTGATAAAAGGTATGTAATGCTTCGCGGGCGCTCAGGATTCTATTCATATGCCATATTCGAGCGGCAACAAGGTTGGCCTGCTTTGGATGTGGGTCAAATCAGATCTGTTTATAAGCTTCAAAGTTCCAAGTTTCAATACATGGCTATTTCGGACAAGATTCAACGGATGATGCCAACAATAGATGATCGAAACAATGGTAAACCTCTAGCCTATAAAGAAGCTGTTCTCTTAACAAATCCAGCCAATCCAGAGTTTAAAGGAGAGGTGGATGATAAGTACCAATATTCTTGTGACGACAAAGACAACAAGTTGAACGGATGGATTTCCCTTGATCCTGCAATTGGAGTTTGGCTTATAACACCGACTGATGAATTCCGTATGGGTGGTCCTTTTAAGCAAGACCTTACTTCTCATGCCGGCCCTACACTTCTTTCTATGTTTCATAGCACTCATTATGCTGGTAAAGACTTGACAATGAGGTTCCAAGATGGAGAGCCATGGAAAAAGGTCTTTGGACCGTTCTTTGTCCATTTGAATTCGCTTCCTGGTAAAGGAGATCCTAAAGTTCTATGGCAAAAGGCTAAGGAACAGTTGAAGGAGGAAATGAAAACCTGGCCTTATGAATTCGCGTTGTCAAATGATTTTCCCAAGGCTAAACAACGGGGATCAGTTGCAGGCAGATTATTAGTCAATGACAGATTTAAAGAACCAAAGCCTGCTGCTTCTGGGTGGGTTGGTCTAGCTGCACCAGGTGCTGCAGGCTCATGGCAGACTGAAATGAAGGGTTACCAGTTTTGGACCCAGACAGATGCTAGCGGAAACTTTGAGATCAGAAATGTTCATGTGGGCAAGTATAGCGTATATGCCTCCGTTCCTGGTTTCATAGGCAGCTTCAAATCTGCAACTGATGTCATCATCACACCAGGGAAGCATATGAATCTAGGTGATCTAGTTTACTTACCCCCAAGAAGTGGACCCACACTGTGGGAAATCGGAGTACCTGACCGCACTGCAGCTGAGTTCTTCGTGCCTGAACCTAACCCCAACCTCACCAATCGACTTTTCCTTCATGATCAGCAGAACAAGTACAGACAATACGGTTTGTGGGATCGATACACTGATCTTTACCCAAAGAATGATCTCGTTTACACAGTTGGCGTGAGTGATTTTCGCAAGGATTGGTTTTTCGCTCAAGTGCTTCGGAGAGAAAATGGCAAGTACGAGCCAACAACATGGCAGATCAAATTCCCGATGAAGAACGTAACACCAAACACCAATTATACTCTACAAATCGCGCTTGCATCTGCAAGCCAAGCTGAATTGCAGGTTAGGATCAACAATCCAGACTTGAAAGCTCGTCCCCTTTTTACGACATTAATGATAGGAAGAGATAACGCGATTGCAAGACATGGGATACATGGATTGTACTGTTTGTATACTATTGATGTGCCAAGTGCATTGCTTCGGCCTGCAGAAAACACGATTTTCCTCACACAGTCTAGAAATTTAGAAACATTCCGAGGGATCATGTATGACTATATACGTTTAGAAGGACCCCCATCTTCTCGAAGATTACTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_311091.p1 GENE.R_Transcript_311091~~R_Transcript_311091.p1 ORF type:5prime_partial len:568 (+),score=66.46,CBM-like|PF14683.2|8.5e+02,CBM-like|PF14683.2|4.1e-54,Rhamnogal_lyase|PF06045.7|1.1e-48,fn3_3|PF14686.2|7.9e-27,fn3_3|PF14686.2|2.8e+02,CarboxypepD_reg|PF13620.2|5e-05,CarboxypepD_reg|PF13620.2|1.6e+03 R_Transcript_311091:3-1706(+)
EKDEPNETDIEGTSFKIISQTEDHVEISFISPKSTSIPLEVDKRYVMLRGRSGFYSYAIFERQQGWPALDVGQIRSVYKLQSSKFQYMAISDKIQRMMPTIDDRNNGKPLAYKEAVLLTNPANPEFKGEVDDKYQYSCDDKDNKLNGWISLDPAIGVWLITPTDEFRMGGPFKQDLTSHAGPTLLSMFHSTHYAGKDLTMRFQDGEPWKKVFGPFFVHLNSLPGKGDPKVLWQKAKEQLKEEMKTWPYEFALSNDFPKAKQRGSVAGRLLVNDRFKEPKPAASGWVGLAAPGAAGSWQTEMKGYQFWTQTDASGNFEIRNVHVGKYSVYASVPGFIGSFKSATDVIITPGKHMNLGDLVYLPPRSGPTLWEIGVPDRTAAEFFVPEPNPNLTNRLFLHDQQNKYRQYGLWDRYTDLYPKNDLVYTVGVSDFRKDWFFAQVLRRENGKYEPTTWQIKFPMKNVTPNTNYTLQIALASASQAELQVRINNPDLKARPLFTTLMIGRDNAIARHGIHGLYCLYTIDVPSALLRPAENTIFLTQSRNLETFRGIMYDYIRLEGPPSSRRLL*

Click here to download the sequence:
Link to NCBI Protein BLAST