Transcript Information: R_Transcript_312253.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value4E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.22534519697184
Replicate 20.2592135853864
Replicate 30.84839768874639
Condition 2: 8 Hour
Replicate 10.30229462897834
Replicate 20.27606026964427
Replicate 31.3445637496583
Condition 3: 24 Hour
Replicate 11.1337188754422
Replicate 20.5445742935945
Replicate 30.27021857638145


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_312253.p1 GENE.R_Transcript_312253~~R_Transcript_312253.p1 ORF type:5prime_partial len:81 (+),score=1.28 R_Transcript_312253:2-244(+)
AAAGTTATTCATTGCTACAAATGCTCTCGATGTTTGCAACTAGACATGCAATTTGTATATGTATTATCTGGTTGGGAAGGATCAACAGCAGAAGATGAAAGGGTACTTCAAGATGCCCTATCAAGACCACATGGCTTAAGAGTTCCTCGTGATAAGATAGTATGTAAAATTAGAAAAAGCAGTTTATTCTTTCTTTTTATTTTTTATCATTTTTTGACTTCAATGTTGTTGACAAGAACATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_312253.p1 GENE.R_Transcript_312253~~R_Transcript_312253.p1 ORF type:5prime_partial len:81 (+),score=1.28 R_Transcript_312253:2-244(+)
KVIHCYKCSRCLQLDMQFVYVLSGWEGSTAEDERVLQDALSRPHGLRVPRDKIVCKIRKSSLFFLFIFYHFLTSMLLTRT*

Click here to download the sequence:
Link to NCBI Protein BLAST