Transcript Information: R_Transcript_31368.p1


Annotated TAIR IDAT5G41190.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16487628-16490012 | Reverse length=602
E-Value3.2E-233
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.601743648121
Replicate 214.51018213483
Replicate 317.544810165206
Condition 2: 8 Hour
Replicate 115.128209553393
Replicate 216.806267880636
Replicate 320.666244575759
Condition 3: 24 Hour
Replicate 123.213706352854
Replicate 220.334386779688
Replicate 324.153151828057


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_31368.p1 GENE.R_Transcript_31368~~R_Transcript_31368.p1 ORF type:complete len:628 (+),score=154.55,NOB1_Zn_bind|PF08772.7|2.2e-21 R_Transcript_31368:176-2059(+)
ATGGAGGAATCAGAACCACCACCACCACCACCCAAACAACCAACATCATGTTGGTCAAACATAGTGAAGCAGCAAAACCCAGATCATAATAAACCCCCACTTGCCACCTCAACACCCACCCAACTTCTTCAAACCTGCAAATCCTCAAATGGTATTGCTTTAGCTGTTGTTGATGCCAACGCCATCATTCAAGGTGGTGAAAGACTCACTTCCTTAGCTGATAAATTTGTTTCAATCTCTGAAGTTATCAGTGAAGTCCGTGACCCCACCTCTCGTCACAGGCTCTCTTTCCTCCCCTTCAATGTTGAGATTCTGGAACCTTCCCCTGAGTCACTTAAGAAAGTTATTAGCTTTGCAAGGGCAACGGGTGATCTGCAGACTCTTTCTGAGGTTGATTTGAAGCTCATTGCTCTGGCTTACACATTGGAGGCTCAAATTCATGGCACTAATCATCTAAGAGATAACCCTCCACCTATACATGTCGTTAATGTTAGAAGGTTGCCTGAGAAGGAATTGCCAGGGTGGGGCAATAATGTACCTAACCTTGAAGAGTGGGAGGCTTTGGAAAATCTGGCTGAAAATGGTTCAGATCCGAATTCAAGAATTCTCGCTTTGAAAGATTTGAGCTTGAATATTCCTGTTGAAGACCGTGCGAGTTTGCAAGAGGGCTCTGTTGGAAACGGTAGTGACGGTCATGCGATGGACCATGATAGTACTGATCAGACTCCAAGGAGACACAGAAGATTTCCACCCAAAAAGAGAGAGGTAAAGATTGAAGGAAAAAAGATGGTTGCAGATGGGATTGATGCATCTCAAGGACAATTTGATGATGATGCCGGTGATTGGTTGCCTGCTGTTAGTCGAAGCACCCACAGAAGATATCTTAGGAGAAAGGCTCGCCGTGATATGTATGAGGCGTCATTAAAAGATGATGAACAACACGATGCTGTTGAGGATACTGAAGGGGAAGTTATCATGGAACCCGAGTGCCACGATCAGGTTTCTGAGGAAAAAAATCATGTAGCTCTAGGGGCATCTGAAGAGGAAAATCATGTTGATAGGAGTCACGGGACAAGTAATGGCGAAGATATTTCAACTATTCTGCAACAGATGAGACTTGAACAGGAGTCTTTGAAGGCTCAAGTAGGGGACGAAGAGCCAATCAATTCTCGTTTAGGAGCTGAATCAATTGGCACCTGCTTTGATGATGCACATTCAGTGGATGACAGAGATCAATGTGAAGTCAGTAATGAGGAATTAGATCAATTAGAGAATGGAAGTGTTGATAACTCATATGTAGAAGATGATGGAAGTGAACAGAGCTGGATGCTAAGATCTTTATCTGATTCATCTGTTGCTTGTATCACTGGAGATTTTGCTATGCAAAACGTTATCCTGCAAATGGGTTTACGTTTGTTGGCCCCTGGTGGAATGCAGATACGTGAGTTGCACAGGTGGGTACTGAAATGTCATGCTTGCAATAATGTAACTGCTGAAATCGGGCGAATCTTTTGTCCAAAGTGTGGAAATGGTGGTACCTTAAGAAAGGTAGCTGTCACTGTCGGTGAGAATGGGGTCGTGCTAGCAGCTCGTAGGCAGCGTATTTTTTTGAGAGGCACAAAGTTTTCACTACCCTTACCACAAGGAGGAAGAGATGCAGTAGCCAAGAATCCCATTCTACGTGAAGACCAGCTCCCAAAGAAGTTCCTTAATCCTAAGACAAAGAAGTCCAACAAGGACGATGATATCTTTTTGTCGAATGTTATCTTCAGCCACCACACTGATAAGAAAGCTCCTCATAGACCACCTGTAAGACAAGCATTAGCAGTCTTTTCTGGAAAAAGAAACCCTAATGACAACCATTACTCTCGTAAGAAGCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_31368.p1 GENE.R_Transcript_31368~~R_Transcript_31368.p1 ORF type:complete len:628 (+),score=154.55,NOB1_Zn_bind|PF08772.7|2.2e-21 R_Transcript_31368:176-2059(+)
MEESEPPPPPPKQPTSCWSNIVKQQNPDHNKPPLATSTPTQLLQTCKSSNGIALAVVDANAIIQGGERLTSLADKFVSISEVISEVRDPTSRHRLSFLPFNVEILEPSPESLKKVISFARATGDLQTLSEVDLKLIALAYTLEAQIHGTNHLRDNPPPIHVVNVRRLPEKELPGWGNNVPNLEEWEALENLAENGSDPNSRILALKDLSLNIPVEDRASLQEGSVGNGSDGHAMDHDSTDQTPRRHRRFPPKKREVKIEGKKMVADGIDASQGQFDDDAGDWLPAVSRSTHRRYLRRKARRDMYEASLKDDEQHDAVEDTEGEVIMEPECHDQVSEEKNHVALGASEEENHVDRSHGTSNGEDISTILQQMRLEQESLKAQVGDEEPINSRLGAESIGTCFDDAHSVDDRDQCEVSNEELDQLENGSVDNSYVEDDGSEQSWMLRSLSDSSVACITGDFAMQNVILQMGLRLLAPGGMQIRELHRWVLKCHACNNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARRQRIFLRGTKFSLPLPQGGRDAVAKNPILREDQLPKKFLNPKTKKSNKDDDIFLSNVIFSHHTDKKAPHRPPVRQALAVFSGKRNPNDNHYSRKKL*

Click here to download the sequence:
Link to NCBI Protein BLAST