Transcript Information: R_Transcript_316343.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value4E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.47616419881875
Replicate 20.54772957607734
Replicate 30
Condition 2: 8 Hour
Replicate 10.21292056475865
Replicate 20.38888490158584
Replicate 30.31568018470238
Condition 3: 24 Hour
Replicate 10.79853242531145
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_316343.p1 GENE.R_Transcript_316343~~R_Transcript_316343.p1 ORF type:internal len:115 (+),score=11.86,UBN2|PF14223.2|2.6e-12,UBN2_2|PF14227.2|1.1e-11 R_Transcript_316343:3-344(+)
TGGCTGTATGCTACTGTATCAAAAGAATTATCGGTTGAATTTCATGATGTTAATCATTCCTTTGATATTTGGACACGCTTGCATACTCATTTTAATACTGATAGTCTTGCTCGCTCCATTGAACTTAAGAGGTCTCCCACAATGTTATGTAAAACTGATCAACAAAGTATTGAGTCATATTTGCGTGATGTTAAGAAAACTGCCGATGCATTAGCTTCTATTCGGTGTCCTGTTTCTAATCAAGATTTAGTGCAATACACTTTAATGGGTTTGCCGTCGGAGTATGAGACTATGATAACCATATTGCTTCACCAATCTGGAAATTTGTTGTTTGATGATCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_316343.p1 GENE.R_Transcript_316343~~R_Transcript_316343.p1 ORF type:internal len:115 (+),score=11.86,UBN2|PF14223.2|2.6e-12,UBN2_2|PF14227.2|1.1e-11 R_Transcript_316343:3-344(+)
WLYATVSKELSVEFHDVNHSFDIWTRLHTHFNTDSLARSIELKRSPTMLCKTDQQSIESYLRDVKKTADALASIRCPVSNQDLVQYTLMGLPSEYETMITILLHQSGNLLFDDL

Click here to download the sequence:
Link to NCBI Protein BLAST