Transcript Information: R_Transcript_3176.p1


Annotated TAIR IDAT5G38470.1
Annotated Gene NameRad23 UV excision repair protein family
Annotated Gene Symbol(s)RAD23D
Annotation TypeOrtholog
Chromosome Positionchr5:15404720-15407500 | Forward length=378
E-Value5E-179
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 191.385153966702
Replicate 267.880347060164
Replicate 388.002147951812
Condition 2: 8 Hour
Replicate 177.332281163058
Replicate 298.338735305961
Replicate 3103.88306385821
Condition 3: 24 Hour
Replicate 199.904303979899
Replicate 281.434802057516
Replicate 397.316102377128


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_3176.p1 GENE.R_Transcript_3176~~R_Transcript_3176.p1 ORF type:5prime_partial len:455 (+),score=109.74,UBA|PF00627.27|8e-15,UBA|PF00627.27|6e+03,UBA|PF00627.27|2.1e-12,XPC-binding|PF09280.7|7.7e-23,ubiquitin|PF00240.19|4.4e-17 R_Transcript_3176:3-1367(+)
CTCTCTCAACTTGTAATAAGTTGTAAACATCTCTCAACTCCTATATACAAAGAAAACACAAAAGAGAGAGAAAAAAACATAATCAGCCACTTTCAACACTCTCTCTCCCTTACTTTTCTCTCTCCTCCGCGACTCTACTCCGGCGACGACGACGACGGCCGTACGGAGGAGCAAATCAAGATGAAAATCTTCGTCAAGACTCTCAAGGGCACCAACTTCGAGATCGAAGCCAATCCCGATGACACTGTTGCAGATGTGAAGAAAAATATTGAAAGTGTGCAAGGTGCAGATGTCTACCCTGCTAACCAACAGATGCTCATCCACCAGGGAAAGGTTCTTAAAGATACAACAACATTGGGAGAAAATAATGTTGCTGAGAGTAGTTTTATAGTAATCATGTTATCTAAGAGCAAGCCTGCAGCAGCTGGAGCTTCATCTGCATCTCCTGCACCTGCTAGTCAGGCCCAGCCTCGGAGCGCTACACCCCCTGTTGCCGCGCCAACATCAACTCCTCCCCAAACTCAGCCACAGGCTGCTACAGAACCCAGCCCTGCAGCGCCGACTCCGGCGTCTGTCCAAACCAGTGGTGAAGGAGGTATTCATGGCCAAGCCGAATCAAATTTCGTTGCAGGTCCCATCTTGGAGGCTACCATTCAGGAGATGCTTGATATGGGTGGAGGCAGCTGGGACAGGGATACAGTTGTTCGTGCTCTACGTGCTGCATATAACAACCCTGAAAGGGCTGTTGAATATTTATACATTGGAATTCCCGAGGAAACTGAAGCTCCTCCAGTTGCTCGAGCACCTGCTGCTGCTCCTACGGCTACGGGTGGGCAGACCGCTAACCCTCAGGCTCAAGCTCCTCCAGCAGCTGGATCTGTTCCATCAACAGGTCCTAATGCAAGCCCTTTAGATCTCTTTCCTCAGGGGCTTCCTAGTGTGGGTTCAAATGCTGGTGCTGGCTCTTTGGATTTCCTTCGCAATAGTCAGCAGTTTCAAGCATTGCGAGCTATGGTGCAAGCCAACCCCCAGATTTTGCAGCCTATGCTTCAAGAACTGGGGAAGCAGAATCCACAGCTGATGCGGCTCATTCAAGATCATCAAGCTGATTTTCTTCGCCTGATTAACGAACCTGTTGAAGGAGAAGGGAACCTCCTCTCGCAGTTGGCCTCTGCAATGCCACCAACTGTATCCGTCACACCTGAGGAGCGTGAAGCCATTGAACGCCTCGAAGCCATGGGGTTCAGACGGGCCACGGTTCTGCAAGTTTATTTTGCATGCAATAAGAATGAGGAGTTGGCAGCAAATTATCTCTTAGATCATATGGACGAGTTTGAGAATGAAGACGATGAGGGGCTTTCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_3176.p1 GENE.R_Transcript_3176~~R_Transcript_3176.p1 ORF type:5prime_partial len:455 (+),score=109.74,UBA|PF00627.27|8e-15,UBA|PF00627.27|6e+03,UBA|PF00627.27|2.1e-12,XPC-binding|PF09280.7|7.7e-23,ubiquitin|PF00240.19|4.4e-17 R_Transcript_3176:3-1367(+)
LSQLVISCKHLSTPIYKENTKEREKNIISHFQHSLSLTFLSPPRLYSGDDDDGRTEEQIKMKIFVKTLKGTNFEIEANPDDTVADVKKNIESVQGADVYPANQQMLIHQGKVLKDTTTLGENNVAESSFIVIMLSKSKPAAAGASSASPAPASQAQPRSATPPVAAPTSTPPQTQPQAATEPSPAAPTPASVQTSGEGGIHGQAESNFVAGPILEATIQEMLDMGGGSWDRDTVVRALRAAYNNPERAVEYLYIGIPEETEAPPVARAPAAAPTATGGQTANPQAQAPPAAGSVPSTGPNASPLDLFPQGLPSVGSNAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQDHQADFLRLINEPVEGEGNLLSQLASAMPPTVSVTPEEREAIERLEAMGFRRATVLQVYFACNKNEELAANYLLDHMDEFENEDDEGLS*

Click here to download the sequence:
Link to NCBI Protein BLAST