Transcript Information: R_Transcript_31775.p1


Annotated TAIR IDAT4G37930.1
Annotated Gene Nameserine transhydroxymethyltransferase 1
Annotated Gene Symbol(s)SHM1, STM, SHMT1
Annotation TypeOrtholog
Chromosome Positionchr4:17831891-17834742 | Reverse length=517
E-Value4.4e-323
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 149.408293196539
Replicate 243.589722014541
Replicate 354.568183809758
Condition 2: 8 Hour
Replicate 146.972883776348
Replicate 246.007825532235
Replicate 361.762623149888
Condition 3: 24 Hour
Replicate 164.91224158631
Replicate 264.283509679215
Replicate 360.627723743113


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_31775.p1 GENE.R_Transcript_31775~~R_Transcript_31775.p1 ORF type:complete len:539 (+),score=112.52,SHMT|PF00464.15|7e-209 R_Transcript_31775:60-1619(+)
ATGGCGATGGCAATGACCCTTCGTAGGCTCTCCTCTTCTTCGTCGAACACCTCCTTTCGTTCTCTCTTCAATGGGCCCACTACGTACCATATGTCTTGTTTGTCTAGCCAAGCTGCTCTTAACATAGATCGATCTCGCGTTAATTGGATAAGGCAGCTGAATGAACCGCTTGAGGTTATTGATCCTGAAATTGCTGACATTGTTGAGTTGGAGAAAGCCCGCCAATGGAAGGGGCTTGAGCTTATCCCATCGGAGAACTTCACCTCAGTTTCAGTAATGCAAGCAGTTGGGTCTGTCATGACTAACAAATACAGTGAAGGATATCCGGGTGCTAGATACTATGGAGGAAATGAGTACATTGATATGGCCGAGATACTATGTCAGAAGAGGGCACTCGAAACATTTCAGTTGGATCCTGCAAAATGGGGAGTCAATGTGCAATCCCTATCTGGATCACCAGCCAACTTTCAAGCTTATACTGCACTTTTGAAGCCACATGAGAGAATCATGGCACTTGATCTTCCTCATGGCGGGCACCTCTCACATGGCTATCAGACTGACACTAAGAAGATATCTGCTGTGTCCATTTTCTTTGAGACAATGCCATACAGATTAGACGAGAGCACTGGATATATTGATTACGAGCAGCTGGAGAAGAGTGCTGCTCTTTTTAGGCCAAAATTAATAGTTTCTGGCGCAAGTGCTTATGCCCGCCTTTATGACTATGCACGGATCAGAAAGGTTTGTGACAAGCAAAAAGCTATCATGCTAGCAGATATGGCACATATAAGTGGTTTGGTTGCTGCTGGTGTCATTCCTTCTCCTTTTGAGTATGCAGATATAGTGACAACTACAACACACAAATCTCTGCGAGGACCACGAGGGGCCATGATATTTTTCAGGAAGGGTGTAAAGGAGATAAACAAGCAAGGGAAGGAAGTAATGTATGACTTTGAAGACAAGATCAATCAGGCCGTCTTTCCTGGACTTCAGGGTGGACCACATAATCATACAATTACTGCCTTAGCTGTTGCTTTGAAACAGGCTATGACCCCCAAATACAAAGCCTATCAGGAACAAGTGCTAAGTAACTGCTCGGCATTTGCCCAGAGCTTGAACAAAAAAGGGTATGACCTGGTATCTGGAGGGACTGATAACCATCTAGTCTTGGTAAACCTAAGAGACAAGGGGATTGATGGATCAAGGGTTGAAAAGGTCCTGGAAGCTGTTCATATTGCAGCTAATAAAAATACGGTTCCTGGAGATGTGTCAGCCATGATTCCTGGAGGCATTCGTATGGGAACCCCAGCTCTAACATCAAGAGGATTTATCGAAGAAGATTTTGCGAAAGTGGCAGATTTCTTTGATGCTGCTGTGAAGTTGGCATTAAAGATCAAGTCTGAGACAACAGGGACGAAGTTGAAGGATTTTGTGGCAACTATGCAATCTGATGCCAACATTCAATCTGAGATTGCAAAGCTCCGAGGAGAAGTTGAGGAATATGCAAAGCAATTCCCAACCATTGGCTTTGAGAAGGAGACGATGAAATACAAGGACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_31775.p1 GENE.R_Transcript_31775~~R_Transcript_31775.p1 ORF type:complete len:539 (+),score=112.52,SHMT|PF00464.15|7e-209 R_Transcript_31775:60-1619(+)
MAMAMTLRRLSSSSSNTSFRSLFNGPTTYHMSCLSSQAALNIDRSRVNWIRQLNEPLEVIDPEIADIVELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAEILCQKRALETFQLDPAKWGVNVQSLSGSPANFQAYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYEQLEKSAALFRPKLIVSGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVMYDFEDKINQAVFPGLQGGPHNHTITALAVALKQAMTPKYKAYQEQVLSNCSAFAQSLNKKGYDLVSGGTDNHLVLVNLRDKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMIPGGIRMGTPALTSRGFIEEDFAKVADFFDAAVKLALKIKSETTGTKLKDFVATMQSDANIQSEIAKLRGEVEEYAKQFPTIGFEKETMKYKD*

Click here to download the sequence:
Link to NCBI Protein BLAST