Transcript Information: R_Transcript_31956.p1


Annotated TAIR IDAT1G72440.1
Annotated Gene NameCCAAT-binding factor
Annotated Gene Symbol(s)EDA25, SWA2
Annotation TypeOrtholog
Chromosome Positionchr1:27268325-27273596 | Reverse length=1043
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.6740632910669
Replicate 23.3594080666077
Replicate 34.7384222913184
Condition 2: 8 Hour
Replicate 13.2741099415174
Replicate 24.7021740100322
Replicate 35.3106426500789
Condition 3: 24 Hour
Replicate 19.0256979272345
Replicate 26.6039746620929
Replicate 37.579399451577


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_31956.p1 GENE.R_Transcript_31956~~R_Transcript_31956.p1 ORF type:3prime_partial len:875 (+),score=231.03,CBF|PF03914.13|2.3e+02,CBF|PF03914.13|1.2e-50 R_Transcript_31956:129-2750(+)
ATGGCAAACACCAAACCCAAGAAAACCTCCCAATCGAAATCAAAACCCAAAGAAGACGACCTTGACAAAATCCAATCTGATGTAGCTTCATTTGCATTCTCTCTTGGTCTTGCTTCTTCTTCTCTCCCTTCTGGTTTCAATGACACTGATTTCAGACCCAAAAAGAAACCCCCCAATCAACAACAACAAAACCCTAAACCAACAACCCAGAACAAAACCAAAAACCCCACTTCCCAAAAGCCTCAATTTGAAAAACCCACTTCAAAAAAACCCTCTTTTAACAATCCCAGATACAACAAAGCCAACACCCATATCAACAACAACAATAACGATCAAGTCTTTGTTGGTAACTCCATGTCATCATTTGATAAGTTCAAGAACCTTACTAAACTTCCTTTGATTAAAGCTAGTGTCTTGGGGGCATGGCATGAGGATGAGGCTGAGCTGGAGGCCAAAGTTTTGGGGGAAGAAAGAAGGAACAAGTTGGAAATTCGGAATGCTGAGGAATGGAAGAAATCGGTTGATAAGAAGAAAGAGCTTGGGGAAAGGTTGTTGGGTCAGTATACATTGGATTATGAGGCTTCAAGGGGTCAAAGTGGTGATATCAAGATGCTTATTGCCACTCAAAGGTCTGGGACTGCTGCTGATAAGGTTTCGGCTTATTCGGTTTTGATTGGAGATAACCCCATTGCCAATATGAGATCACTTGATGCTCTTTTGGCCATGGTAACATCAAAGGTTGGGAAACGTCATGCTCTAACAGGCTTTGAAGCTCTAAAAGAGTTGTTTCTACAAAGTTTGTTGCCTGACTGTAAATTGAAGACCCTCTTCCAGCAACCCCTTAGCCATCTTCCTGAAACAAAAGATGGTTACTCTCTTCTAATGTTCTGGTACTGGGAGGAATGCTTAAAATTAAGGTATGAACGGTTTGTTTCTGCTCTTGAAGAGGCATCAAGGGACATGTTGCCTATACTAAAAGACAAGGCATTGAAGATAATGTATGCACTTATAAGAAGTAAATCAGAACAAGAGCGAAAGTTACTCACTGCCTTGGTCAACAAGCTTGGGGATCCTAACAGCAAGGCTGCATCAAATGCCGACTATTATTTGACTAACCTTCTGTCTGATCATCCAAACATGAAGGTGGTGGTGATTGATGAGGTGGACTCATTTTTATTTCGCCCACATCTGGGATTGCGTGCTAAGTATCACGCAGTTAATTTTTTGAGTCAAATTCGCTTGAGTCAGAAGGGGGATGGGCCTAAGGTGGCAAAACGGCTGGTAGATGTATATTTTGCACTATTTAAGGTATTGATCTCTGTGGCAGCTAGTGGTGAAAAAGCCAAGGTTACAGAGACGAAGAAAGGTTCTAACAAGGACAACAAAGTGCAGTATATGTCTGAATCTCACGTGGAATTGGATTCACGACTTTTGTCTGCACTTCTATCAGGTGTAAACAGGGCATTTCCTTTTGTATCTGGGGACGAAGCGGATGAAGTTGTTGATGTTCAAACTCCAATGCTTTTCCAGCTTGTTCATTCACAAAACTTCAATGTCGGCATCCAGGCATTAATGCTTCTTGATAAAATTTCATCAAAAAATCAGGTTGTCAGTGATAGATTTTATCGTGCCTTGTATGCAAAATTGCTAATTCCTGCTGCCTTGAACACCTCTAAGGCAGAGATGTTTATTGGACTACTGTTGAGAGCTATGAAGAATGATATAAATTTAAAGCGTGTAGCTGCCTTCTCAAAACGTCTTCTACAGGTAGCTCTTCAGCAACAACCTCAGTATGCATGTGGGTGTCTGTTTCTCCTCTCTGAAGTTCTGAAAGCAAGGCCACCTTTGTGGAATATGGCAATCCAAAATGAGGCTGTTGATGAAGATCTTGAGCATTTTGAAGATGTGCCTGATGAAACTGAGAATCCACCTGTTATTGATGCTGAGGTGCCACAAAGAAATGACGGTGATACAGGTAGAACTAGTGACCCTGAAAGTGATTCCTCAGAAGACGAGGGAGCCTCTTCAGCATCGTCTTCTGAGGAAGATGAAGATGAGAATTTACTTGTCAAAACAAATGTCGAGGAATTCCAGGAATCCAACTCGAAGTTGTCTGAGCACCTTCAGGAATCGTCTACCAAGCTCTCGCTACCTGGAGGATATGATCCTCGGCGTAGAGAACCTTCATTCTGCAATGCAGACCGTACAAGCTGGTGGGAACTTACTGTACTTGCCTCTCACACTCACCCATCAGTATCAACCATGGCAAAGACACTTCTTTCTGGTGCAAATATCGTCTACAATGGCAACCCATTGAACGATCTTTCCCTGACTGCTTTTCTAGACAAATTCATGGAAAAGAAGCCTAAGCAGAGCACATGGCATGGTGGCTCACAAATCGAACCAGCTAAGAAGCTTGATATGAACAAGCATTTGATTGGGCCTGAAATCCTTTCATTGGCTGAAGATGATGTGCCCCCTGAAGACGTTATCTTTCATAAGTTCTACATGAACAAGATGAGTACATCAACCAAGCCAAAGAAGAAAAAGAAGAAGAAGAAGGCAGCTGAAGAAGAGGAAGCAGAGGACTTGTATGGTGGAGATGAGAGTGATAATGAAGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_31956.p1 GENE.R_Transcript_31956~~R_Transcript_31956.p1 ORF type:3prime_partial len:875 (+),score=231.03,CBF|PF03914.13|2.3e+02,CBF|PF03914.13|1.2e-50 R_Transcript_31956:129-2750(+)
MANTKPKKTSQSKSKPKEDDLDKIQSDVASFAFSLGLASSSLPSGFNDTDFRPKKKPPNQQQQNPKPTTQNKTKNPTSQKPQFEKPTSKKPSFNNPRYNKANTHINNNNNDQVFVGNSMSSFDKFKNLTKLPLIKASVLGAWHEDEAELEAKVLGEERRNKLEIRNAEEWKKSVDKKKELGERLLGQYTLDYEASRGQSGDIKMLIATQRSGTAADKVSAYSVLIGDNPIANMRSLDALLAMVTSKVGKRHALTGFEALKELFLQSLLPDCKLKTLFQQPLSHLPETKDGYSLLMFWYWEECLKLRYERFVSALEEASRDMLPILKDKALKIMYALIRSKSEQERKLLTALVNKLGDPNSKAASNADYYLTNLLSDHPNMKVVVIDEVDSFLFRPHLGLRAKYHAVNFLSQIRLSQKGDGPKVAKRLVDVYFALFKVLISVAASGEKAKVTETKKGSNKDNKVQYMSESHVELDSRLLSALLSGVNRAFPFVSGDEADEVVDVQTPMLFQLVHSQNFNVGIQALMLLDKISSKNQVVSDRFYRALYAKLLIPAALNTSKAEMFIGLLLRAMKNDINLKRVAAFSKRLLQVALQQQPQYACGCLFLLSEVLKARPPLWNMAIQNEAVDEDLEHFEDVPDETENPPVIDAEVPQRNDGDTGRTSDPESDSSEDEGASSASSSEEDEDENLLVKTNVEEFQESNSKLSEHLQESSTKLSLPGGYDPRRREPSFCNADRTSWWELTVLASHTHPSVSTMAKTLLSGANIVYNGNPLNDLSLTAFLDKFMEKKPKQSTWHGGSQIEPAKKLDMNKHLIGPEILSLAEDDVPPEDVIFHKFYMNKMSTSTKPKKKKKKKKAAEEEEAEDLYGGDESDNEE

Click here to download the sequence:
Link to NCBI Protein BLAST