Transcript Information: R_Transcript_321312.p1


Annotated TAIR IDAT5G55820.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:22586287-22594035 | Forward length=1826
E-Value6E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0263976712487
Replicate 21.9582041839035
Replicate 32.6111307104423
Condition 2: 8 Hour
Replicate 11.1418278990943
Replicate 22.6647683023175
Replicate 32.2571951030533
Condition 3: 24 Hour
Replicate 13.5685710716638
Replicate 23.7711064424303
Replicate 33.1754182965447


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_321312.p1 GENE.R_Transcript_321312~~R_Transcript_321312.p1 ORF type:internal len:193 (-),score=47.79 R_Transcript_321312:2-577(-)
TGGGATATTGGTAAACCTTTCATTTCTCCTGTAGGAGAGGGGTTGGAAGAGATCAAATCTAAATCTGGTGGCTCAAACAAGCGAGTTAGTGGCAATCCCGAACTTGTTTGCTTCCCCATTCAGGAAGATCCTGAAAGCAGCGAGGAAGATGTAAATGTAAATAACATGGCTGATATGAGCATGAAGAAAATGGATTCATCTCTGAAAAGAAGCTCCATTAGAGAACCACTGCGTGACATTACTGAAAAGAATGAAGGTATTTTGGATCCAACTCATGAAGTTGAGAGGGGTAGTTTAGAATCTGTAAGTACAGAAATCAGTGTGAGTGAGATGCATAATGAAGACACTAAAAAGAATGAAATGCATCATGAAAGCAGATGGAGAAAGCAAGGAAAAGAGAACCAGAGTTTGTCAATTGGTGTGAACAGCATAATGAAGCACTCTAAATCACGTAGTATTCGGCATCGCAAACCAAAGCTATCTGGAAAATCTAGCTTGAGAAGCAGAGGGCAAAGTCTGTCAGAGAAGGATCCAAGATGCAGTAACCTTAGTAGAGCGCAAAGTTTGTCGGAGAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_321312.p1 GENE.R_Transcript_321312~~R_Transcript_321312.p1 ORF type:internal len:193 (-),score=47.79 R_Transcript_321312:2-577(-)
WDIGKPFISPVGEGLEEIKSKSGGSNKRVSGNPELVCFPIQEDPESSEEDVNVNNMADMSMKKMDSSLKRSSIREPLRDITEKNEGILDPTHEVERGSLESVSTEISVSEMHNEDTKKNEMHHESRWRKQGKENQSLSIGVNSIMKHSKSRSIRHRKPKLSGKSSLRSRGQSLSEKDPRCSNLSRAQSLSEK

Click here to download the sequence:
Link to NCBI Protein BLAST