Transcript Information: R_Transcript_322056.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value6E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.045013467212623
Replicate 20.051778792641919
Replicate 30.084735157568998
Condition 2: 8 Hour
Replicate 10.24153750872745
Replicate 20.33086384968462
Replicate 30.31334469628288
Condition 3: 24 Hour
Replicate 10.39631233192091
Replicate 20.081585421296833
Replicate 30.13494269227434


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_322056.p1 GENE.R_Transcript_322056~~R_Transcript_322056.p1 ORF type:3prime_partial len:811 (+),score=58.99,UBN2|PF14223.2|3.4e-19,UBN2|PF14223.2|5.2e+03,rve|PF00665.22|1.4e-17,UBN2_3|PF14244.2|1.1e-15,UBN2_3|PF14244.2|1.5e+04,UBN2_2|PF14227.2|1.4e-11,gag_pre-integrs|PF13976.2|1.8e-07 R_Transcript_322056:80-2431(+)
ATGGCTGGAAACTCTAACTCTATTCCCAACCATGTTGAACCCACAAAACCCCTCCTTCTCATACAATTCAACAATGTTATTAAACTCACTGCCACAAACTACACAACATGGCAGCCTCAAATTAGATCAACTCTCATTGGGTATGATCTCTTTCACTTTGTTGATGGGTCAACTCCAACACCTAGTGCCGAAATTGCAGACACTGATGGCAAGATCAAAGCAAATCCTACATACCAAACTTGGATGCGCCAAGATAAACTACTTTTTGGTGCCTTACTCGGCACTCTCTCACCCAATGTTGCTCCGCTCGTTTGTCATGCTACTTCATCCTCTCAAATTTGGCAAACCCTCGAGAAAACGTATGCCAATCCTTCTAGAGGTCACCTCCTTCAAATTAAAGCCAATCTCAACAACATCACCAAAACTAACCAAACCATCACTGAATACATGCAATCCATAAAATCATGCACTGACAAATTGGCTGCAATGGGAAAACCTATGGATCAAGAAGATGTTACTGCCAAAGTTCTTCATGGCCTTGACTATGATATCTACAAACCCGTCATTGATACCATCAATGGGCGGGACACACAAATCACCTTTGAAGAACTCCATGAAAAATTGCTCACTTTTGAACTCACCTACAAAAACAAAGCCACAAACCCACCACATGATTTCAACCCCACGGCACATGCTGCCTATAAACGCCAACCCACTCGTCCCTCCTACTCCAACTACAACTCTAATCCTTCATCTCCCATACTCCCCACACCCAATCCTACCACACACAACTCTCCTAAGCCATTCCTAGGCAAGTGCCAGTGGTGCCGCCTTCAAGGACATGTACTGTCTCAATGTCCCGGGTTCAAGAAGCTTCACCCCACTGTCACTGTGCCTTCCTTCAATCCACGGCCTACCCGAACCCATGCCCCCAATTACTATCCTCCTCAAGCCCATAGTGCACATGCCCAAACCTCTCATCTCCCAAAATCGTGGCTGCTTGACAGTGGCGCCAGTCATCACATCACGCATGACCTCAACACACTCTCTCTCCATGCACCTTATGACGGCTCGGATGAACTCATCATTGGTGATGGGTCTGCCCTCCCTATCACTCACATTGGTTCTTTCTCAATCTCTACTCCTTCCAAAACTATTTATTTTAATAATGTTCTATGTGTTCCCTCTATTTCTCGCAACATTATTTCTATCTCTCAACTTTGCAAAGACAACAATCTCTCTATTGAATTCTTACCCTCGTCTTTTTTGATAAAGGAAATTCCGACGGGCCACCCACTCCTTCAAGGGACACCTAGTGGTGGAATCTATGATTGGAACTCGTCTTCTCCCAGTGTCTTCTCCAGCGTCACCACAAATTACCATGAATGGCATCATAAGTTGGGCCATCCATCACCACCTGTTATTAGTTATCTTAGGTCTCAATTTTCTCTTCCTATTTCTACTGTTTCTCCAAATAATTACTGTAATTCTTGCCTAATTAATAAAAGTCACAAGTTACCTTTTTCTACATCTACCATAAGCTCTTCTGCCCCTCTTGATATTATATTCACTGATGTATGGACTTCTCCCATCCACTCACATGACAACTACAAGTACTATGTAATTTTTGTTGATCATTTTACAAAGTATATGTGGTTCTACCCTCTCAAAAATAAATCTGACACAGCATCCACATTATTACGCTTCCGTGCTCAAGTTGAAAAATTTTTTAACAAACCTATACTTCGCCTATTCTCTGATAATGGCGGAGAATACATCAAACTACACTCCACTCTTCTTGAGAATGGCATATCACATCTCACATCTCCTCCCCACACCCCTGAACACAATGGCTATGCTGAACGCCGGCATCGTCATATTGTTGAAACGGGTCTCTCTCTCCTCACCCATGCCAAACTCCCACTTATCTTCTGGAGTCATGCATTTGCAACTGCTACATATCTCATAAATCGCCTACCAACACCCACCCTCTCGAACTCCTCTCCTTATCTCAAACTTTTTCACCAACCACCCAACTATGATAAACTACATAGCTTTGGTTGTCTTTGCTACCCATGGCTTCGTCCCTATACCTCACACAAACTTGACCCTAAATCTACTCCATGTATTTTTATAGGATACTCGGCATCTCAAAGTGCCTACTATTGTCTTGACCCCACAACGGAACGCATCTATGCATCTCGTCATGTTCGGTTTGTCGACAATGTGTTTCCTTATTCGTCTCTAGCCCCCCAAAATAAACCAACTTCTTCTTTCAATAGTGACACATGGTGCACTATTACTCTTCCCACAATACCCAATGTACCAGCAACTCCTACCACATCTTCCACC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_322056.p1 GENE.R_Transcript_322056~~R_Transcript_322056.p1 ORF type:3prime_partial len:811 (+),score=58.99,UBN2|PF14223.2|3.4e-19,UBN2|PF14223.2|5.2e+03,rve|PF00665.22|1.4e-17,UBN2_3|PF14244.2|1.1e-15,UBN2_3|PF14244.2|1.5e+04,UBN2_2|PF14227.2|1.4e-11,gag_pre-integrs|PF13976.2|1.8e-07 R_Transcript_322056:80-2431(+)
MAGNSNSIPNHVEPTKPLLLIQFNNVIKLTATNYTTWQPQIRSTLIGYDLFHFVDGSTPTPSAEIADTDGKIKANPTYQTWMRQDKLLFGALLGTLSPNVAPLVCHATSSSQIWQTLEKTYANPSRGHLLQIKANLNNITKTNQTITEYMQSIKSCTDKLAAMGKPMDQEDVTAKVLHGLDYDIYKPVIDTINGRDTQITFEELHEKLLTFELTYKNKATNPPHDFNPTAHAAYKRQPTRPSYSNYNSNPSSPILPTPNPTTHNSPKPFLGKCQWCRLQGHVLSQCPGFKKLHPTVTVPSFNPRPTRTHAPNYYPPQAHSAHAQTSHLPKSWLLDSGASHHITHDLNTLSLHAPYDGSDELIIGDGSALPITHIGSFSISTPSKTIYFNNVLCVPSISRNIISISQLCKDNNLSIEFLPSSFLIKEIPTGHPLLQGTPSGGIYDWNSSSPSVFSSVTTNYHEWHHKLGHPSPPVISYLRSQFSLPISTVSPNNYCNSCLINKSHKLPFSTSTISSSAPLDIIFTDVWTSPIHSHDNYKYYVIFVDHFTKYMWFYPLKNKSDTASTLLRFRAQVEKFFNKPILRLFSDNGGEYIKLHSTLLENGISHLTSPPHTPEHNGYAERRHRHIVETGLSLLTHAKLPLIFWSHAFATATYLINRLPTPTLSNSSPYLKLFHQPPNYDKLHSFGCLCYPWLRPYTSHKLDPKSTPCIFIGYSASQSAYYCLDPTTERIYASRHVRFVDNVFPYSSLAPQNKPTSSFNSDTWCTITLPTIPNVPATPTTSST

Click here to download the sequence:
Link to NCBI Protein BLAST