Transcript Information: R_Transcript_323704.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value0.0003
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.037327118516807
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.045102778917336
Replicate 30.044760132284044


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_323704.p1 GENE.R_Transcript_323704~~R_Transcript_323704.p1 ORF type:complete len:489 (-),score=69.50,rve|PF00665.22|4.5e+03,rve|PF00665.22|2.1e-16,gag_pre-integrs|PF13976.2|1.4e-06 R_Transcript_323704:647-2113(-)
ATGTCTGCAACTTCTGAAAATATTGTGAATTCTACAATTGTTGCGGTAGTTCAGTCTGATCTGAACTTCAACTCATCTATTCCTTCCAGTGGTAATGATGTCTTTGCTGGCTTATCTTCAGATCAGTGCTCTCAGATGATATGTGCTTTACAGTCTAAGCTGGCTAATATTGGAGTTATTTCTGGTTCTGGAGGTTCTAATGGCAGTGATAATACTGTACACACAAAAGCTGCTTTTGCTAATTTTGCAGGTAAAAGCATTTGCTCATCTTCATATGTAGTAGGAGATTGTGCTTGTTTTACATGTTTAGCTACTGCTGGCAAGTTTTGGATCATTGACACAGGTGCTAGTGATCACATGTGTCATGATTCCTCCTTTTTCATTCACAAACACAAACTCTCAGATCCCTTTTCTGTTACATTACCAAATGGTCATGTTTTGCATGTACACGAGTCTGGTGATGTGCAAATTCAACCTGACATTATCTTACATAATGTTCTATACATTCCGAACTTTAAATACAACTTACTGTCTGTTGCCAAGTTGTCTGAACAACTTCAATGTTCTGTATTGTTTACAAAAGATACTTGTACATTGCAGGGCCCTTCAATGAAGAGGCCTCTGGCTCTTGGTAAGGTGCAAGGAGACCTTTACATCCTCCCACTCAGTGATACTCTTCACAATAAGCAACATGTCTCTCCTTCTGTTGTTAATCTTGTTGACAGTACTGTCTCTAGTAATAACAGTTCATGCAATGATCACTTTTGTTCTGCTGTCAAATCTTGTCCTTCTCATGTGTGGCACAATAGACTTGGTCACTTACCTTTCAATAAAATGAAAACTTTACCTATTTCCTTTATTGATACTGTTGCATCTGATTCTTTACCTTGTACTGTTTGTCCTAAATCTAGGCAACACAGGCAATCATTTCCTATTAGTCAAACACACTCTAAACACTTGTTTGAACTCATACACATTGATCTTTGGGGACCTTATTCTACCACCACATACAATGGCCATGAACACTTTCTTACTATAGTTGATGATTTTAGTAGAGCAACTTGGACATATCTCATGCCTACTAAATCTAATTCTTTGAGTATTCTGCAAAATTTTATTGCCATGGTTGAGACACAATTCAATACTCATGTTAAGACAATTAGATCAGACAATGCTTTGGAATTGGGCCTTAGTAAAGAGGCTAGTTCTTTTTTCCTCAGTAAAGGAATTGTACATCAAACAAGTGTCAGAGATACTCCTCAACAAAATGGCATTGTAGAAAGAAAACACAAACACCTCCTTGAGACTGCCAGAGCATTGTTGTTTCAGTCCAATTTGCCACTCCAATACTGGGGGGAATGCATTCTCACAGCCACATACCTAATAAACAGATTTCCTACCAAGTTACTTCATGGCCGACCCCTTACCAGTTACTGTTTGGAGAAGTTCCTTCCTATCACCATTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_323704.p1 GENE.R_Transcript_323704~~R_Transcript_323704.p1 ORF type:complete len:489 (-),score=69.50,rve|PF00665.22|4.5e+03,rve|PF00665.22|2.1e-16,gag_pre-integrs|PF13976.2|1.4e-06 R_Transcript_323704:647-2113(-)
MSATSENIVNSTIVAVVQSDLNFNSSIPSSGNDVFAGLSSDQCSQMICALQSKLANIGVISGSGGSNGSDNTVHTKAAFANFAGKSICSSSYVVGDCACFTCLATAGKFWIIDTGASDHMCHDSSFFIHKHKLSDPFSVTLPNGHVLHVHESGDVQIQPDIILHNVLYIPNFKYNLLSVAKLSEQLQCSVLFTKDTCTLQGPSMKRPLALGKVQGDLYILPLSDTLHNKQHVSPSVVNLVDSTVSSNNSSCNDHFCSAVKSCPSHVWHNRLGHLPFNKMKTLPISFIDTVASDSLPCTVCPKSRQHRQSFPISQTHSKHLFELIHIDLWGPYSTTTYNGHEHFLTIVDDFSRATWTYLMPTKSNSLSILQNFIAMVETQFNTHVKTIRSDNALELGLSKEASSFFLSKGIVHQTSVRDTPQQNGIVERKHKHLLETARALLFQSNLPLQYWGECILTATYLINRFPTKLLHGRPLTSYCLEKFLPITI*

Click here to download the sequence:
Link to NCBI Protein BLAST