Transcript Information: R_Transcript_323705.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.62226003254723
Replicate 20.95437729164991
Replicate 30.26030383631991
Condition 2: 8 Hour
Replicate 10
Replicate 20.50820186002695
Replicate 30
Condition 3: 24 Hour
Replicate 10.26088417304209
Replicate 20
Replicate 30.74617175068968


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_323705.p3 GENE.R_Transcript_323705~~R_Transcript_323705.p3 ORF type:complete len:88 (+),score=15.11,UBN2_3|PF14244.2|3.5e-23 R_Transcript_323705:483-746(+)
ATGATTTTGACTAGCTCTCCTTTTGATGGTAATGGTTTCAATTCTTGGAAAAGAAGCATGCTTATTGCCTTATCTGCTAAGAACAAGCTTGGTCTGGTGAATGGTTCAATTGTTAAACCTAATGATAATTCTGTGCTTTTACCTGCTTGGGAGAGATGCAATAATATGGTAATTTCATGGTTATTGAATTCTTTAAGTAGAGATATAGCAGACAGTGTTTTGTATAGTGTAACTGCTCTCATAAATCTGGAAAGATTTAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_323705.p3 GENE.R_Transcript_323705~~R_Transcript_323705.p3 ORF type:complete len:88 (+),score=15.11,UBN2_3|PF14244.2|3.5e-23 R_Transcript_323705:483-746(+)
MILTSSPFDGNGFNSWKRSMLIALSAKNKLGLVNGSIVKPNDNSVLLPAWERCNNMVISWLLNSLSRDIADSVLYSVTALINLERFK*

Click here to download the sequence:
Link to NCBI Protein BLAST