Transcript Information: R_Transcript_32478.p1


Annotated TAIR IDAT5G28640.1
Annotated Gene NameSSXT family protein
Annotated Gene Symbol(s)AN3, GIF, GIF1, ATGIF1
Annotation TypeOrtholog
Chromosome Positionchr5:10647831-10649620 | Reverse length=210
E-Value1.9E-53
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.629648579031
Replicate 221.652434804307
Replicate 324.577020545872
Condition 2: 8 Hour
Replicate 122.317845655041
Replicate 215.83895797084
Replicate 317.395293511204
Condition 3: 24 Hour
Replicate 126.903680344966
Replicate 228.028558173442
Replicate 324.053675463205


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_32478.p1 GENE.R_Transcript_32478~~R_Transcript_32478.p1 ORF type:5prime_partial len:192 (+),score=46.88,SSXT|PF05030.8|3.1e-23,SSXT|PF05030.8|1.6e+04 R_Transcript_32478:1-576(+)
GTGTTCCCAGTAGAGATAGAAAGTGAGAGAAACAGAAACAAAAAAAATTTTGCTTGCAGTTTTTTCTCTGCTCTGCTACTTAATTTATTTCAGCTAGAAAATCATAATCTTCCTTACAAAAGAAAAAAAAAAAAAGAAGAGAGATTGGGTAAGGTAAGTGGTATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCCTATTACTCCAACAACGTCACTACTGATCATATTCAACAGTACTTGGATGAGAACAAGTCATTGATTCTGAAGATTGTGGAAAGCCAAAATTCAGGGAAGCTCAATGAGTGTGCAGAGAACCAAGCTAGGCTACAGAGAAATCTGATGTACCTGGCTGCCATTGCTGATTCTCAACCACAACCAGCTACCATGCATTCTCAGTTTTCACCAAGTGGCATGATACAGCCTGGTGCACAATACATGCAGCAGCAGCAGCAACAGCAGCAGCAAGCTCAATCGATGACGCCTCAAGCTCTCAATGGCTGCACGCTCATCCATGCTATACAGCCAACAGGCATATTCAGCTCTTCAACAGAACCAGGCCTTACATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_32478.p1 GENE.R_Transcript_32478~~R_Transcript_32478.p1 ORF type:5prime_partial len:192 (+),score=46.88,SSXT|PF05030.8|3.1e-23,SSXT|PF05030.8|1.6e+04 R_Transcript_32478:1-576(+)
VFPVEIESERNRNKKNFACSFFSALLLNLFQLENHNLPYKRKKKKEERLGKVSGMQQHLMQMQPMMAAYYSNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQRNLMYLAAIADSQPQPATMHSQFSPSGMIQPGAQYMQQQQQQQQQAQSMTPQALNGCTLIHAIQPTGIFSSSTEPGLT*

Click here to download the sequence:
Link to NCBI Protein BLAST