Transcript Information: R_Transcript_325262.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value6.4E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.08233843300509
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_325262.p1 GENE.R_Transcript_325262~~R_Transcript_325262.p1 ORF type:complete len:255 (-),score=23.97,UBN2_3|PF14244.2|1e-15,UBN2|PF14223.2|2.5e-15,UBN2_2|PF14227.2|1.2e-09,Retrotrans_gag|PF03732.13|4.7e+02,Retrotrans_gag|PF03732.13|7.4e-07 R_Transcript_325262:42-806(-)
ATGGCTGAAAAACCTCACCCTGCCTTCTCTGCTTCCAATATTAAAGCCTTCATTCCCCTTCAATTGGATATATCTGACACAAACTATGAAACATGGAAAGAACTCTTTGAGACGCACGCAACCAGTTTCGATGTTCTGGGCCATATTGACGGTACTTCCACTCCGACAGAGGCCACCGCTGCTGCATGGAAACGACTTGATTCCTTAGTCAAGTCATGGATTTACGGTACCATCTCGCTGACTCTCTTCACCATGGTCGTCACTGGCCAAAAACCAACAGCCCATACCATCTGGACAAATGTTCAGAACTTGTTTCGTGACAACAAAGAGTCACGATCAGTCTGTTTGGAGCACGAATTCCGTACACTTGAGTTGGGTGATCACTCCGTCGCTACGTACTGTCATCGCCTCAAGTCCCTGGCTGATCTTCTAGCAGGGGTTGATTCTCCTGTATCAGACAAAACGTTGGTGATTCAAATGCTCAATGGCCTTCCCCACAAGTATGGTAATGTTATCAATGCAATTCGCTATAAAACTCCCTTTCCTTCATTCATGGAGGCACGTTCCATGTTAGCACTTGAAGAAGACCGTTTGAGTAAGGAGTCTCATCTTTCTACCCACTCAAGCTACTGCATCATCTCCTACTGTCCTATATGCTGGCCCCACCACAAACACAAACACCCAAGTCAAGCCACCTTCCAAAAATACCAACTACAATGGGAAAGGGAAAAACTATTACAAAGGGAACAAAGGGAAAAATACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_325262.p1 GENE.R_Transcript_325262~~R_Transcript_325262.p1 ORF type:complete len:255 (-),score=23.97,UBN2_3|PF14244.2|1e-15,UBN2|PF14223.2|2.5e-15,UBN2_2|PF14227.2|1.2e-09,Retrotrans_gag|PF03732.13|4.7e+02,Retrotrans_gag|PF03732.13|7.4e-07 R_Transcript_325262:42-806(-)
MAEKPHPAFSASNIKAFIPLQLDISDTNYETWKELFETHATSFDVLGHIDGTSTPTEATAAAWKRLDSLVKSWIYGTISLTLFTMVVTGQKPTAHTIWTNVQNLFRDNKESRSVCLEHEFRTLELGDHSVATYCHRLKSLADLLAGVDSPVSDKTLVIQMLNGLPHKYGNVINAIRYKTPFPSFMEARSMLALEEDRLSKESHLSTHSSYCIISYCPICWPHHKHKHPSQATFQKYQLQWEREKLLQREQREKY*

Click here to download the sequence:
Link to NCBI Protein BLAST