Transcript Information: R_Transcript_32923.p1


Annotated TAIR IDAT5G13710.1
Annotated Gene Namesterol methyltransferase 1
Annotated Gene Symbol(s)SMT1, CPH
Annotation TypeOrtholog
Chromosome Positionchr5:4424048-4426866 | Reverse length=336
E-Value3E-129
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 177.781461756791
Replicate 265.626627431846
Replicate 383.223976291549
Condition 2: 8 Hour
Replicate 176.041530338681
Replicate 281.802623017
Replicate 394.497832174477
Condition 3: 24 Hour
Replicate 1104.98293757392
Replicate 296.31165817041
Replicate 394.810057487967


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_32923.p1 GENE.R_Transcript_32923~~R_Transcript_32923.p1 ORF type:3prime_partial len:199 (+),score=31.40,Methyltransf_11|PF08241.8|2.5e+03,Methyltransf_11|PF08241.8|2.1e-20,Methyltransf_31|PF13847.2|1.4e-14,Methyltransf_25|PF13649.2|2.5e+03,Methyltransf_25|PF13649.2|9.2e-13,Methyltransf_23|PF13489.2|3.4e+03,Methyltransf_23|PF13489.2|8e-10,Ubie_methyltran|PF01209.14|8.1e-09,CMAS|PF02353.16|7.8e-09,Methyltransf_12|PF08242.8|8.2e+02,Methyltransf_12|PF08242.8|7.6e-08,Methyltransf_18|PF12847.3|1.4e-07 R_Transcript_32923:376-969(+)
ATGTCAAAGACTGGAGCAATGGATCTGGCCTCCGGCGTGGGCGGAAAGATCGACAAAGATAATGTCTATTCTGCCGTTGAGAAGTACGAGAAGTATCATGTGTACTATGGAGGTGAAGAGGAAGAAAGGAAATCTAACTACACTGACATGGTCAACAAGTATTATGATCTGGTTACAAGTTTCTATGAATTTGGATGGGGAGAGTCCTTCCATTTTGCCCACAGATGGAACGGAGAATCTCTTCGTGAGAGCATCAAACGTCATGAGCACTTTCTTGCTTTGCAACTTGGACTAAAACCTGGACAGAAGGTGTTGGACGTGGGATGTGGCATAGGCGGACCGCTCAGGGAAATATCGAGATTTAGCTCAACATCTGTGACAGGATTGAACAATAATGAATATCAAATTACAAGGGGAAAGGAACTGAACCGGATTGCAGGGGTGGACAAGACATGCAGTTTCGTCAAGGCTGATTTCATGCACATGCCATTTCCTGACAATTCTTTCGATGCAGTCTATGCAATTGAGGCAACATGTCACGCCCCTGATGCAGTTGGGTGCTACAAAGAGATACACAGGGTATTGAAGCCTGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_32923.p1 GENE.R_Transcript_32923~~R_Transcript_32923.p1 ORF type:3prime_partial len:199 (+),score=31.40,Methyltransf_11|PF08241.8|2.5e+03,Methyltransf_11|PF08241.8|2.1e-20,Methyltransf_31|PF13847.2|1.4e-14,Methyltransf_25|PF13649.2|2.5e+03,Methyltransf_25|PF13649.2|9.2e-13,Methyltransf_23|PF13489.2|3.4e+03,Methyltransf_23|PF13489.2|8e-10,Ubie_methyltran|PF01209.14|8.1e-09,CMAS|PF02353.16|7.8e-09,Methyltransf_12|PF08242.8|8.2e+02,Methyltransf_12|PF08242.8|7.6e-08,Methyltransf_18|PF12847.3|1.4e-07 R_Transcript_32923:376-969(+)
MSKTGAMDLASGVGGKIDKDNVYSAVEKYEKYHVYYGGEEEERKSNYTDMVNKYYDLVTSFYEFGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREISRFSSTSVTGLNNNEYQITRGKELNRIAGVDKTCSFVKADFMHMPFPDNSFDAVYAIEATCHAPDAVGCYKEIHRVLKPG

Click here to download the sequence:
Link to NCBI Protein BLAST