Transcript Information: R_Transcript_329840.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value1E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.80056846292626
Replicate 20.18417807382718
Replicate 30.80374517881237
Condition 2: 8 Hour
Replicate 10.42957657802185
Replicate 20.19614808632619
Replicate 30.3184493091296
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.38399481906837


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_329840.p1 GENE.R_Transcript_329840~~R_Transcript_329840.p1 ORF type:5prime_partial len:114 (+),score=16.87,DDE_Tnp_4|PF13359.2|3.5e-08,DDE_Tnp_4|PF13359.2|2e+03 R_Transcript_329840:2-343(+)
TTTAATTTTGCACATGCATCATTTCAGAATGTAATTGAACGTACATTTGGAGTTTGGAAAAATAGGTGGAGGATATTGTTTAAGATGCCAAGTTACAAATTTTCTACGCAATGTAAAATTGTGGCAACCACTACGGCTCTTCACAATTTTATTAGAAAGCATGCAATTAATGATGAAGAGTTTGACAAGTGTGATGAATACCCCATTTACATGCCCGATGTAGATGGTGAAAATGAGGAAGAGGAAAGCAATGAAGATGATAATTCATATGAGCATAGTGGAGTGGAGCATTGGATGATCGTGATATGGCTATTGTTCAGATTTTTAATGCATGGAAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_329840.p1 GENE.R_Transcript_329840~~R_Transcript_329840.p1 ORF type:5prime_partial len:114 (+),score=16.87,DDE_Tnp_4|PF13359.2|3.5e-08,DDE_Tnp_4|PF13359.2|2e+03 R_Transcript_329840:2-343(+)
FNFAHASFQNVIERTFGVWKNRWRILFKMPSYKFSTQCKIVATTTALHNFIRKHAINDEEFDKCDEYPIYMPDVDGENEEEESNEDDNSYEHSGVEHWMIVIWLLFRFLMHGK*

Click here to download the sequence:
Link to NCBI Protein BLAST