Transcript Information: R_Transcript_330253.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value9E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.55312002893087
Replicate 20.42416768517774
Replicate 30.69414356351977
Condition 2: 8 Hour
Replicate 11.7313237841486
Replicate 21.1293374667265
Replicate 30.18334960222613
Condition 3: 24 Hour
Replicate 11.1594852135204
Replicate 20.66834117850234
Replicate 30.66326377839083


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_330253.p1 GENE.R_Transcript_330253~~R_Transcript_330253.p1 ORF type:complete len:99 (+),score=8.68,DDE_Tnp_4|PF13359.2|1.2e-10 R_Transcript_330253:111-407(+)
ATGCACTTGAAGATTCAAAGAAGGCTTTCCCACATCCACCTAAAGTATTGTGATGTATGTTTAGGTAAATATTATGTTGTAGATGCTGGTTATCCTAACATGAAAAAATACTTGGCCCCATCTAAAGGTCAAAAATATCATTTAGCTGATTTTCGAAGCTCTAGCCAACCTTCAACTGGATTTTGTGAAGTGTTCAATTACAATCAAGCATCGTTGAGAAATGTAGTTGACCGCACAATAGAGGTATGGAAAAATAGATGGGCAATTTTGAGAAATATGCCAAGTTTCTCACTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_330253.p1 GENE.R_Transcript_330253~~R_Transcript_330253.p1 ORF type:complete len:99 (+),score=8.68,DDE_Tnp_4|PF13359.2|1.2e-10 R_Transcript_330253:111-407(+)
MHLKIQRRLSHIHLKYCDVCLGKYYVVDAGYPNMKKYLAPSKGQKYHLADFRSSSQPSTGFCEVFNYNQASLRNVVDRTIEVWKNRWAILRNMPSFSL*

Click here to download the sequence:
Link to NCBI Protein BLAST