Transcript Information: R_Transcript_33058.p1


Annotated TAIR IDAT3G12810.1
Annotated Gene NameSNF2 domain-containing protein / helicase domain-containing protein
Annotated Gene Symbol(s)PIE1, SRCAP, chr13
Annotation TypeOrtholog
Chromosome Positionchr3:4065636-4073992 | Forward length=2055
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.2269670625428
Replicate 23.9380620876502
Replicate 35.447200280042
Condition 2: 8 Hour
Replicate 15.5181064067715
Replicate 26.5477797544524
Replicate 38.3375819117567
Condition 3: 24 Hour
Replicate 17.8869404734409
Replicate 25.70904069847
Replicate 36.7234001956881


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_33058.p1 GENE.R_Transcript_33058~~R_Transcript_33058.p1 ORF type:complete len:2090 (+),score=537.38,SNF2_N|PF00176.19|1.2e-68,Helicase_C|PF00271.27|5.5e-22,HSA|PF07529.9|4.2e-16,HSA|PF07529.9|8.9e+03,ResIII|PF04851.11|4.4e-09,ResIII|PF04851.11|3.4e+03,DEAD|PF00270.25|87,DEAD|PF00270.25|2.1e-05 R_Transcript_33058:269-6538(+)
ATGGCCTCGAAAGGTCCTAGGTCTAAACTTGATCACGACACTCGCGCTCGCCGTCAAAAGGCACTTGAAGCCCCTCGAGAACCCCGGCGCCCCAAAACACATTGGGATCATGTTCTGGAAGAGATGATTTGGTTATCGAAGGACTTTGAGGCAGAGAGGAAATGGAAGTTAGCACAGGCTAAGAAGGTTGCTTTACGAGCTAGCAAGGGCATGCTGGATCAGGCTACAAGAGGAGAAAAGCGATTGAAGGAAGAAGAACAGCGGATGAGAAAAATTGCACTCAATATTTCAAAAGACGTGAAAAAATTCTGGACAAAAATAGAAAAGCTGGTGCTTTACAAGCATCAACTAGAGCTTGATGATAAAAAGAAGAAGGCTCTGGACAAACAGTTGGAGTATCTTTTAGGTCAAACTGAAAGGTATTCAACTATGCTAGCTGAAAATCTCTTGGGCACATCAACATCCTGTGCATCAATACAGCCATGTATACAGGATACAGTTGACACTCAGCAGAAAGAGAGAAATAAAGTTGCAGATGACGGACCCACAGATTTACTTGCTGAAGCTAAATCAGACACAGAGATCTTAGCTGATGCAGTTGATGGTGATGATGATTGCAGTGTAGAATTTGAGGATGAATCGGAAGATGATGAGCAGACTATTGAGGAGGATGAAGCTCTGATAACTGAAGAAGAAAGGCAGGAGGAATTGGCTGCCCTGCAGAATGAAGTAGACTTACCACTAGATGAGCTACTCAAACGCTACTCTATGAGTGATGTCGATGGAGAACTTTGTCCAGAGGGACGAGATGTTGCCTTAGAGTCATATGAAGATGTTAATCCTAGGCAAATTAAAGGAGAAAAGGGCCCAGAACAACATGTTGCAGAGAAGAGCTCTGATTCCCCTGAAGAGGCTGACCCTAAATGTGGAATCGATTTGCAGGTGCCCAAAGAGCATAGTGGCTGTTCGCCTGAGATTTCCACTGCCGGTTCTGGAAAAAGCAATGGTCTTCTGGAGACAGAGAGCAATGTAACTATAACTGAGACCTACCACCCCAAAAATATATCTGATGGAGCAGCTGATCCTGAATTTTTGAATATGGATTATGACTTTGATGATGAGCAGGGAGACGATGAGTTTGTTGCTGCTGTAGGGGAAGAAAAGGATGATGAGACAACATTGGATGAGGAGGAGGAATTGGCAAAAAGGGAGTCAGGAGATCATGAGGATGAGCTTGCATTATTGAAGAAGGAAAGTGAAATTCCTCTGGAAGATTTGCTTTCAAAATATAGCAAGGATTTTGCTGATAGCGGTTCTGCAGATGATGAATCAGATTATGCATCTGCTCACTCTGATATAGGGTCTCTCCCAGAAGATGAACTGCCTGAACAGGAAAAACAAAAATTGGTTTTGGCTGGAGATGATCTCTCTTCTGAGGTAAAAGTGACTTCACCTTCTTACAAAGAAGAAGCTGTGGCTGGACATGAGATCGGTTCTGAAGAAGATAGTGAAACTGATGCTAGAATTGCTGATGCAGCTGCGGCTGCAAGGTCTGCACAGCCGACAGGGAACACTTTTTCCACAACTAATGTGCGCACAAAGTTCCCTTTTCTTATTAAGTACCCGCTTCGTGAGTATCAGCATATTGGACTTGACTGGCTAGTGACAATGTATGAGAAGAGACTCAATGGGATCCTTGCTGATGAAATGGGATTGGGAAAGACAATCATGACAATCGCATTGCTTGCCCACCTGGCGTGTGAAAAGGGAATATGGGGGCCTCATCTCATTGTGGTACCAACTAGTGTCATGCTTAATTGGGAAACTGAGTTTCTCAAGTGGTGCCCTGCATTCAAAATTTTAACTTACTTTGGAAGTGCCAAGGAGCGTAAATATAAGAGGCAAGGTTGGATGAAACCGAATTCTTTCCATGTTTGCATAACAACTTACAGGCTTGTTATTCAGGATTCAAAAATTTTTAAACGGAAGAAGTGGAAATATTTGATTTTAGATGAGGCCCATCTGATAAAGAACTGGAAATCTCAGAGGTGGCAAACTCTTCTAAACTTCAATTCTAAGCGGCGCATCTTGTTGACTGGTACACCATTGCAGAATGATCTGATGGAGTTGTGGTCTTTAATGCATTTCCTGATGCCCCATGTCTTTCAGTCTCACCAGGAGTTTAAGGACTGGTTTTGTAACCCAATATCAGGCATGGTCGAAGGTCAAGAAAAAGTAAACAAAGAAGTGGTTGATCGCTTGCATAATGTCCTACGGCCTTTTATTCTCCGCCGGTTGAAAAGAGATGTTGAGACACAGCTACCTATGAAACATGAGCATGTGATATACTGTAGACTCTCGAAGAGGCAGAGGAATCTCTATGAAGATTTCATTGCAAGCTCAGAAACTCAAGCTACTCTTGCTAGTGCCAATTTCATTGGTATGTTAAATGTTATAATGCAGCTTCGTAAAGTTTGCAATCATCCTGACTTATTTGAGGGGCGTCCGATTATAAGTTCTTTCGACATGGAGGGGATTGAGATGCAGTTAAGCTCTAACATTTGCTCTATACTTCCAACTGGTCCATACTCTTCCGTAAATCTTTCTGGTCTGGGATTTCTGTTTACAAATTTGGATTTCAGCATGACTTCTTGGGAGAGTGATGAAATCCAGTCTATTGCTACTCCCTCGAGATTGATTGAGTGTCGCACTAGTCTTAATAATTTGGAGCTCACCAGGCCTGGATTCAAATATGGGAAACAATGTCTTGGGACAAATATCTTTGAAGATATTCGAAAAGCAATTTTTGAGGAGAGACTCGATGAGGCAAAACAGCGAGCAGCTGCTATTGCATGGTGGAATTCATTGAGATGTCAAAAGAAGCCTGTATACTCAACAAGTCTGCGTGAGCTACTGACTATCAAGCATCCAGTCTATGACATGCAGTGCCACAAGGCAAACCGTCTCTCTTATGATTATTCCTCAAAGCTTGCAGACATAGTTTTGTCACCTGTGGAGCGATTCCAGGATATGAAAGATCAAGTTGAATGTTTCATGTTTGCTATTCCAGCAGCACGAGCTTCCCCTCCTGTCTGTTGGTGCAGTAAATCTGGGACCTCGGCTTTCATTGATCCACTCTACAAAGATAAATGTTCTGAGATCTTGTTGCCTCTTTTGACTCCTATTCGGCCTGCTATTGTTCGGAGGCAATTATATTTTCCTGACAGGCGTTTGATACAGTTTGATTGTGGCAAGCTTCAACAGCTTGCTAATTTGCTCAGGAGATTGAAATCAGAGGGTCATAGAGCTTTGATATTTACTCAGATGACTAAGATGCTTGACATCTTGGAAGCTTTCATAAATTTGTATGGCTATACCTATGTGCGATTGGATGGATCAACTCAACCAGAGGAGAGGCAAACTTTAATGCAACGATTCAATACAAACCCAAAGATATTTTTGTTTATCTTGTCTACTCGCAGTGGTGGTGTTGGTATCAACCTTGTTGGAGCAGATACTGTGATATTTTATGACAGTGACTGGAATCCTGCCATGGACCAACAAGCTCAAGACCGTTGTCATCGCATTGGACAGACACGAGAAGTCCATATATATCGTCTAATAAGTGAGAGCACCATAGAAGAGAACATCTTGAAGAAAGCAAATCAGAAGCGAGCTCTTGATGACCTCGTAATACAGAGTGGTGGGTACAACACTGAATTTTTCAAGAAGCTTGACCCAATGGAGCTGTTCTCTGGTCACAGAATAGCTCCCATCAAGCAGGTGCAGAAAGAGAGAATTTCAGATGATGGGGTTGAGGTTCCTGTGTCTAATGCTGATATTGAGGCTGCTCTCCGAAGTGCTGAAGATGAAGCAGATTATATGGCTTTAAAGAAGGTTGAACAAGAAGAGGCTGTGGAGAACCAAGAATTTACAGAGGAAGCCATTGGGAAGTTGGAAGATGAAGAACTGGCGAATGAGGATATTACGAAAGCCGAAGAGTCTAGGGATCAAACTGCCTTAACCATAGCTTCAAACACAATGAGTGTGGCAGCTGCAAATGGGAATGATGCAGAGGGAGAGAAGGCTTTTACTTTAGCTGGTGATGAAGATGATCTTGATATGTTAGCTGATGTAAAACAAATTGCTGCTGCAGCGGCTGCTTCTGGGCAAGCAGCATTATCCTTTGAGAATCGATTACGCCCAATAGATAGGTATGCCATGCGTTTCTTGGAGCTTTGGGACCCTATCATCAATAAGGACGCGATGGAATATCAGGTTCAGTTTGAGGAGAGAGAGTGGGAGCTGGAGCGTATTGAGAAGTTAAAAGAGGATATGGAGGCTGAGATTGATGATGATGATGAGCCTCTTGTGTACGAGAAATGGGATGCTGAGTTTGCCACCCAAGCATATCACCAGCAAGTGGAGGCTTTGGTGCAACATCAGTTGATGGAAGAACTGGAAAACAAGGCAAAGGAAAAGGAAAGGGAAAACGGTGAGCATGTTGATAGTGATATTATCAAGACTGAAGCATCTAGTGGCAGTAAACTAAAACCAAAGAAGAAGAAACAAAAGAAAGCCAAGTTCAGATCTCTGAAAAAGGAATCTCTGGCTGCTGCATCCAAAGTTTTGAAAGAGGAGGAAGTTTTGGACGATCAGTTATCAGACTATGATGATAGTTTGCAAGAGGCAGAAGCCTGCACAGATTTAGTCATGTTGCAAAGAAAACGGAAGAAGGATGAAAATACTACTACTGAAGAGATGATTTCGAAAGTCAAATCCAAGAAAGCAAAGAAGACAGCTCTTGTAATGACACTTCCAGCCACAGAATCAAATTTGTTGAGTGTTCTACATGAAGAATCTAAAGATCCAAGGCCATATGAGGATGGAGGAACTGATCTAGATTTTAGGCCAGCTAGCCGGGGCAAGTTGGGAGGCAAAATCTCAATTGCTATCTTGCCAATGAAAAGGATCTATACAATAAAGCCGGAAAAGTTGAAGAAAAAAGGGAACATATGGTCGAGTGATTGTTTTCCCTCACCTGATTCCTGGTTACCACAGGAGGATGCAGTTTTATGTGCTCTTGTTCACGAGTATGGCCCGAATTGGAGCTTGGTTAGTGACACTCTATATGGAATCACAGCTGGTGGTCATTACCGGGGAAGATTTCGTCATCCTGTCCTCTGCTGTGAAAGATTTAGGGAACTTGTCCAAAAATATGTTCACTCTGTGGCTGATACACTTAATAGTGAAAAGGCAAGCACTACTGGTCCAACAAAAGGTCTACTGAAAGTCTCCGAGGATAACATACGAATCTTGTTAGATGCTGCCATGGAACAGCCAGATCGTGAATTACTTCTTCAAAGGCACTTCACTTCCCTGCTAACTTCTGCTTGGAGGGTGACATCTTGCCGTGACCAGCAACAAAACCAAACTATTCCCCAGAGCAATAACTATCCTAGCATTAGACTCTTTGGTACATCAGTGAATCCAAATTCCCAGAATTCAACCGGAGGACCACCACAGAGAAGTTTCAATTTGCGTCAGTTTAGTAAGTTGATAACTACTGCTTTGGATGATGTTGAGACCATGGACCAGAACAACACAACCTTCCAATCTAACCAGATGGAAGATGAGTCACCCACTACCGAGAAGTTGGATGTGACGCTGGAGTTAGGAAGAGATGGAGGTGAAACAGGTGACTCTAGTGCTGGCTTACCATCCATCATACCATTGTCAATACCCAGCTTAGACCCACCACTACCTCTGAACATGCCTTCAGAAGAGAACCAGCTTAGGTCCTCTCAACAACTAGCTGAAATGCGTTTCAGGGCTTCCTCAGATGCATGTCTTAGTGATGTTCTTTGTTGGGCCTCATCTGTGTTTCCCATAGTTGAGACCAAATCCCGTTCTTCATTTAAATCACCCTCACTGGGAAAACACAAGCTTACTTCGGCTGAAACCAGTAGGTCTTCTAAATCGAAGATGAGAAAAATGACAGCAGAGACTGCTGAGGACCATCTTTCATTTGCAGACCCACTGTTGCAGTTGCTGCCTGCAGTTATACCTAATGATCCTAGTTGTTCTGTTCCATATCTATCTCCAGATGCTTCGTTTGAGGATCTTCCGTTTGACACACCTAATGGCATGGATGAGGAACTTCCTCGCCAGCCAAATGGTCTTGAGCGGGTTTCCCATTTCTACAACCCTAGTTTTATCTCTGGCCTTGATGACTGCTCTTCTCTGCCTGAGCATGTTGATATTGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_33058.p1 GENE.R_Transcript_33058~~R_Transcript_33058.p1 ORF type:complete len:2090 (+),score=537.38,SNF2_N|PF00176.19|1.2e-68,Helicase_C|PF00271.27|5.5e-22,HSA|PF07529.9|4.2e-16,HSA|PF07529.9|8.9e+03,ResIII|PF04851.11|4.4e-09,ResIII|PF04851.11|3.4e+03,DEAD|PF00270.25|87,DEAD|PF00270.25|2.1e-05 R_Transcript_33058:269-6538(+)
MASKGPRSKLDHDTRARRQKALEAPREPRRPKTHWDHVLEEMIWLSKDFEAERKWKLAQAKKVALRASKGMLDQATRGEKRLKEEEQRMRKIALNISKDVKKFWTKIEKLVLYKHQLELDDKKKKALDKQLEYLLGQTERYSTMLAENLLGTSTSCASIQPCIQDTVDTQQKERNKVADDGPTDLLAEAKSDTEILADAVDGDDDCSVEFEDESEDDEQTIEEDEALITEEERQEELAALQNEVDLPLDELLKRYSMSDVDGELCPEGRDVALESYEDVNPRQIKGEKGPEQHVAEKSSDSPEEADPKCGIDLQVPKEHSGCSPEISTAGSGKSNGLLETESNVTITETYHPKNISDGAADPEFLNMDYDFDDEQGDDEFVAAVGEEKDDETTLDEEEELAKRESGDHEDELALLKKESEIPLEDLLSKYSKDFADSGSADDESDYASAHSDIGSLPEDELPEQEKQKLVLAGDDLSSEVKVTSPSYKEEAVAGHEIGSEEDSETDARIADAAAAARSAQPTGNTFSTTNVRTKFPFLIKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKYKRQGWMKPNSFHVCITTYRLVIQDSKIFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVETQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFIGMLNVIMQLRKVCNHPDLFEGRPIISSFDMEGIEMQLSSNICSILPTGPYSSVNLSGLGFLFTNLDFSMTSWESDEIQSIATPSRLIECRTSLNNLELTRPGFKYGKQCLGTNIFEDIRKAIFEERLDEAKQRAAAIAWWNSLRCQKKPVYSTSLRELLTIKHPVYDMQCHKANRLSYDYSSKLADIVLSPVERFQDMKDQVECFMFAIPAARASPPVCWCSKSGTSAFIDPLYKDKCSEILLPLLTPIRPAIVRRQLYFPDRRLIQFDCGKLQQLANLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYVRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRIAPIKQVQKERISDDGVEVPVSNADIEAALRSAEDEADYMALKKVEQEEAVENQEFTEEAIGKLEDEELANEDITKAEESRDQTALTIASNTMSVAAANGNDAEGEKAFTLAGDEDDLDMLADVKQIAAAAAASGQAALSFENRLRPIDRYAMRFLELWDPIINKDAMEYQVQFEEREWELERIEKLKEDMEAEIDDDDEPLVYEKWDAEFATQAYHQQVEALVQHQLMEELENKAKEKERENGEHVDSDIIKTEASSGSKLKPKKKKQKKAKFRSLKKESLAAASKVLKEEEVLDDQLSDYDDSLQEAEACTDLVMLQRKRKKDENTTTEEMISKVKSKKAKKTALVMTLPATESNLLSVLHEESKDPRPYEDGGTDLDFRPASRGKLGGKISIAILPMKRIYTIKPEKLKKKGNIWSSDCFPSPDSWLPQEDAVLCALVHEYGPNWSLVSDTLYGITAGGHYRGRFRHPVLCCERFRELVQKYVHSVADTLNSEKASTTGPTKGLLKVSEDNIRILLDAAMEQPDRELLLQRHFTSLLTSAWRVTSCRDQQQNQTIPQSNNYPSIRLFGTSVNPNSQNSTGGPPQRSFNLRQFSKLITTALDDVETMDQNNTTFQSNQMEDESPTTEKLDVTLELGRDGGETGDSSAGLPSIIPLSIPSLDPPLPLNMPSEENQLRSSQQLAEMRFRASSDACLSDVLCWASSVFPIVETKSRSSFKSPSLGKHKLTSAETSRSSKSKMRKMTAETAEDHLSFADPLLQLLPAVIPNDPSCSVPYLSPDASFEDLPFDTPNGMDEELPRQPNGLERVSHFYNPSFISGLDDCSSLPEHVDIG*

Click here to download the sequence:
Link to NCBI Protein BLAST