Transcript Information: R_Transcript_331101.p1


Annotated TAIR IDAT5G53110.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21529022-21533008 | Forward length=382
E-Value7E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.25829661728376
Replicate 20
Replicate 30.10805064903846
Condition 2: 8 Hour
Replicate 10
Replicate 20.10547585774144
Replicate 30.17124160962629
Condition 3: 24 Hour
Replicate 10.21658308705381
Replicate 20.10403424004989
Replicate 30.20648778006507


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_331101.p1 GENE.R_Transcript_331101~~R_Transcript_331101.p1 ORF type:5prime_partial len:212 (+),score=22.14,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1.9e+02,zf-RING_2|PF13639.2|1.5e-12,zf-rbx1|PF12678.3|7.4e+03,zf-rbx1|PF12678.3|6.1e+03,zf-rbx1|PF12678.3|2.3e-09,zf-C3HC4_2|PF13923.2|7.8e+03,zf-C3HC4_2|PF13923.2|5.1e+03,zf-C3HC4_2|PF13923.2|3.2e-08,zf-RING_11|PF17123.1|7.1e+03,zf-RING_11|PF17123.1|3.7e-07,zf-RING_11|PF17123.1|5.5e+03,zf-C3HC4|PF00097.21|1.5e+04,zf-C3HC4|PF00097.21|1.4e+04,zf-C3HC4|PF00097.21|2e-06 R_Transcript_331101:1-636(+)
CCAGGTGGTGGTTTTATCCGTGATTCGAATTGTACACTAATGAAGGTTGTGTTCGCCCCAGGAAGCTATCACTTGAGCACTAAATTGAGCAGTATTGAGACTATTTCTCTTACCTGGGATGAGCTCTCGTGTGACTCTTGCAGTTATACTCCTGTGACTTTACCGCCCAAATTTTCTAGATTTGATGACAAAGGAGATGAATCAAGAAAGAGAAATGCATTGAGAATAGGACTGGGAATTGGATTGCCAACAGTTGTCATGTTGATTCTATGTTACTTTCACTGCAAGTGCAATAATCGGGAAGCAGACCAGAGAAATCAAATACAAGAAGCTTCAACCCAAAATCATGCAAATGTGGTAGCCCATGAAGAACAGTGTGCAACTAATATCGGTCTTGATCAAATGACCATAAACTCATATCCAATGGTGGTCATTGACAATACTGGAAGTCTAATCAAATCAAATGATGACATGTGTCCTATATGCCTGTCTCACTATGCCCCTCTAGATACTTTGAAAATTCTTCCTGCTTGCCTTCATCGCTTCCATGCTGAGTGTATTAGTCAATGGCTCCTCTCCAACGCCACTTGTCCCATTTGTAGAATTTCTCCCCCTCTCTTTTCTTTTTCTCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_331101.p1 GENE.R_Transcript_331101~~R_Transcript_331101.p1 ORF type:5prime_partial len:212 (+),score=22.14,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1.9e+02,zf-RING_2|PF13639.2|1.5e-12,zf-rbx1|PF12678.3|7.4e+03,zf-rbx1|PF12678.3|6.1e+03,zf-rbx1|PF12678.3|2.3e-09,zf-C3HC4_2|PF13923.2|7.8e+03,zf-C3HC4_2|PF13923.2|5.1e+03,zf-C3HC4_2|PF13923.2|3.2e-08,zf-RING_11|PF17123.1|7.1e+03,zf-RING_11|PF17123.1|3.7e-07,zf-RING_11|PF17123.1|5.5e+03,zf-C3HC4|PF00097.21|1.5e+04,zf-C3HC4|PF00097.21|1.4e+04,zf-C3HC4|PF00097.21|2e-06 R_Transcript_331101:1-636(+)
PGGGFIRDSNCTLMKVVFAPGSYHLSTKLSSIETISLTWDELSCDSCSYTPVTLPPKFSRFDDKGDESRKRNALRIGLGIGLPTVVMLILCYFHCKCNNREADQRNQIQEASTQNHANVVAHEEQCATNIGLDQMTINSYPMVVIDNTGSLIKSNDDMCPICLSHYAPLDTLKILPACLHRFHAECISQWLLSNATCPICRISPPLFSFSQ*

Click here to download the sequence:
Link to NCBI Protein BLAST