Transcript Information: R_Transcript_332555.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value5E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.62226003254723
Replicate 20.3181257638833
Replicate 30.52060767263983
Condition 2: 8 Hour
Replicate 10.092749488436535
Replicate 21.1011040300584
Replicate 30.4125366050088
Condition 3: 24 Hour
Replicate 10.34784556405612
Replicate 20.41771323656396
Replicate 30.41453986149427


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_332555.p1 GENE.R_Transcript_332555~~R_Transcript_332555.p1 ORF type:complete len:264 (+),score=13.81,LRR_8|PF13855.2|9.4e-06,LRR_8|PF13855.2|0.00084,LRR_8|PF13855.2|6.5e-06,LRR_8|PF13855.2|0.011,LRR_4|PF12799.3|0.26,LRR_4|PF12799.3|0.059,LRR_4|PF12799.3|1.7,LRR_4|PF12799.3|0.23,LRR_4|PF12799.3|3.5e+03,LRR_4|PF12799.3|0.0055,LRR_1|PF00560.29|6.1e+03,LRR_1|PF00560.29|8.6e+02,LRR_1|PF00560.29|53,LRR_1|PF00560.29|4e+02,LRR_1|PF00560.29|0.3,LRR_1|PF00560.29|1.9e+02,LRR_1|PF00560.29|58,LRR_1|PF00560.29|1.3e+02,LRR_1|PF00560.29|3.4 R_Transcript_332555:491-1282(+)
ATGACCAACCTTAATTCTCTACACATTGTTAACACCAGCATGACAGGCCCAATTCCTTCATTCGTGGGCCGTTTACACAACTTGTACGTACTTGTACTCTTAAACAATAAGTTCACCGGCCCAATTCCTAAGGTCCTTTCCAAACTTAAAGGGCTAGGTACCCTTGACCTTAGCTCTAACAACTTTTATGTCCCAATACCTGATTTCTTGGGCCATTTGAGTGACATCAGAATAATTTCTCTGAAATCCAACAGATTTTCTGGTTCAATTCCAGCATCCTTAGGCCCAATAATGTACCTTTATACTCTTGATCTTTCTCGTAACCAGCTTACTGGTTCAATCCCAGATAACATTTTTTCTGTTGAAAGTTTTATTATTGACCTTTACCTGAACAACAACCAGTTTAGTGGATCCATTCCTGAGGCCATGGCTGGATCCAGTATACAGAAACTTGATGTTTCTAGCAATAAACTAACCAACGCCTTGGAGTTGTTTCAAAGAGGTGACTTCCATGCATACCATATTAAACTTAGTAATAATCTTCTTCGATTTGACTTCTCGAGAGCCCTCTTCTCGGATCATATAAGGAGCTTGAATATAAGTCATAACATGATATACGGCTCGCTACCCCTACGGCTAACCAAATTGAAGCAGTTGAGTTCTCTTGACTTAAGTTATAACAAGCTATGTGGGCCAATTCGAGTTAGCTCAAGGTTGCTGGAGCAATCCAACTCAACTAACTTTGCTCATAACAAATGTCTATGCGGTGCTCCTTTAGACCCTTGCAGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_332555.p1 GENE.R_Transcript_332555~~R_Transcript_332555.p1 ORF type:complete len:264 (+),score=13.81,LRR_8|PF13855.2|9.4e-06,LRR_8|PF13855.2|0.00084,LRR_8|PF13855.2|6.5e-06,LRR_8|PF13855.2|0.011,LRR_4|PF12799.3|0.26,LRR_4|PF12799.3|0.059,LRR_4|PF12799.3|1.7,LRR_4|PF12799.3|0.23,LRR_4|PF12799.3|3.5e+03,LRR_4|PF12799.3|0.0055,LRR_1|PF00560.29|6.1e+03,LRR_1|PF00560.29|8.6e+02,LRR_1|PF00560.29|53,LRR_1|PF00560.29|4e+02,LRR_1|PF00560.29|0.3,LRR_1|PF00560.29|1.9e+02,LRR_1|PF00560.29|58,LRR_1|PF00560.29|1.3e+02,LRR_1|PF00560.29|3.4 R_Transcript_332555:491-1282(+)
MTNLNSLHIVNTSMTGPIPSFVGRLHNLYVLVLLNNKFTGPIPKVLSKLKGLGTLDLSSNNFYVPIPDFLGHLSDIRIISLKSNRFSGSIPASLGPIMYLYTLDLSRNQLTGSIPDNIFSVESFIIDLYLNNNQFSGSIPEAMAGSSIQKLDVSSNKLTNALELFQRGDFHAYHIKLSNNLLRFDFSRALFSDHIRSLNISHNMIYGSLPLRLTKLKQLSSLDLSYNKLCGPIRVSSRLLEQSNSTNFAHNKCLCGAPLDPCS*

Click here to download the sequence:
Link to NCBI Protein BLAST