Transcript Information: R_Transcript_333175.p1


Annotated TAIR IDAT5G41960.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16789760-16790868 | Forward length=217
E-Value5E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.8467920755066
Replicate 23.8525321864767
Replicate 32.731996227064
Condition 2: 8 Hour
Replicate 14.0435373307377
Replicate 24.1029140993001
Replicate 31.6652853780171
Condition 3: 24 Hour
Replicate 12.527465015894
Replicate 22.4281018962103
Replicate 31.0040231507751


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_333175.p1 GENE.R_Transcript_333175~~R_Transcript_333175.p1 ORF type:5prime_partial len:109 (+),score=27.47 R_Transcript_333175:2-328(+)
GAGGAGAGTTGGCTACCAATTGCAAGTATTGTTCTCTGCATTATTCATATACAGCTGGAAGCAAGTATTAGAAGTGGTGATATCAATGCCTTGGCCTTCTTGCATGAGACTGCTCAGTGTTTTGGTTTGGTTGCTAAAAGTAAAGACAATCACTCTAAAAGACCAGGAAAAATGCATGAGTCAAGGAGACGCAACAACATGAATCTACCCCAGGGACAAACCCAATCAAGGGATGAGATTGAAAGATGGAAAATTTCTAGAGAGCCTCCCCGAGAGCTTGAAAATTTGAATGAAGACAATGACAAGAACGATGAAATGGAGCACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_333175.p1 GENE.R_Transcript_333175~~R_Transcript_333175.p1 ORF type:5prime_partial len:109 (+),score=27.47 R_Transcript_333175:2-328(+)
EESWLPIASIVLCIIHIQLEASIRSGDINALAFLHETAQCFGLVAKSKDNHSKRPGKMHESRRRNNMNLPQGQTQSRDEIERWKISREPPRELENLNEDNDKNDEMEH*

Click here to download the sequence:
Link to NCBI Protein BLAST