Transcript Information: R_Transcript_33689.p1


Annotated TAIR IDAT5G22750.1
Annotated Gene NameDNA/RNA helicase protein
Annotated Gene Symbol(s)RAD5, RAD5A
Annotation TypeOrtholog
Chromosome Positionchr5:7565374-7570871 | Reverse length=1029
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.9365563313532
Replicate 23.4555990098046
Replicate 33.2849893184088
Condition 2: 8 Hour
Replicate 13.1343792473375
Replicate 23.292795882292
Replicate 36.3766485817529
Condition 3: 24 Hour
Replicate 15.1704782399257
Replicate 24.8610724600021
Replicate 35.1612008164484


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_33689.p1 GENE.R_Transcript_33689~~R_Transcript_33689.p1 ORF type:complete len:1039 (+),score=211.39,SNF2_N|PF00176.19|3.4e+03,SNF2_N|PF00176.19|7.2e-89,HIRAN|PF08797.7|1.1e-16,HIRAN|PF08797.7|1.4e+04,Helicase_C|PF00271.27|1.5e-15,zf-C3HC4_3|PF13920.2|4.1e-10,zf-C3HC4|PF00097.21|2.1e-09,zf-RING_2|PF13639.2|4.5e-09,zf-C3HC4_2|PF13923.2|1.4e-07,zf-RING_5|PF14634.2|2.4e-06,zf-C3HC4_4|PF15227.2|8.7e-06,zf-RING_UBOX|PF13445.2|9.4e-06,zf-RING_UBOX|PF13445.2|1.7e+03 R_Transcript_33689:229-3345(+)
ATGATGAGCAACACCAAAGTAAAAGACGAAGCCATATCAACAGTACGATCAATAGTGGGTCAAGATTACACTGAAATGGACATACTTAGAGCCCTTCACATGGCCAACAACGACGCTACAGGAGCAATCAACATAATCTTCGATACCCCCAATTTCATTTCGAAACCCCCAAGTCGTCAAAACGCTAGAATCGGCAATTTGAGCCGCAAGATCGAAGCACCGAGCACCGAACTGTTTTGTATCGAGGAGAGTGATAACTGTGATTCAATTACTAAGCATGAGGTTTTGACTGGAAATGGTGATCAAAGGAGAGAGAAAGAGGATTCTGTTACAGTTAGCGGGAGTGAGTGGTGGTTTGTGGGATACGGTGAAATTTCTGGGATGTCAACTTGTAAAGGAAGGAGAATTAAGACCGGCGACAAGGTGGAGTTCGCGTTTCCGAAGAATAATAGGTTGAGTTCTCCGTCGCCAGGCAGGGTTTTTGGGAGGGGGAAACAGGTGGGAGTTTGTTCTGAGATTGTTAGGTTTTCTACAAAGGCTGGTGAAGAGGTAGGTCGGATACCGAATGAGTGGGCAAGGTGTTTGGTGCCTTTGGTTAGAGATAAGAAGATTAAAATTGAAGGATTTTGTAAATATGCTCCTGAAACTTTGAGTATTATGGACACCATTGCCTTAAACGTGAGTGTATATATAAACAGCGCATTGTTCCGGAAGCACCATCAGAATTCACTCAAAGCAAATGCTAATTCTAATTCCAATGAGGAATCTGTTATTCATCCCCTGCCGACTTTATTTAAGCTGCTTGGGATAGTCCCTTTTCAGAAGGCAGAGTTCACTCCTGACAATTTATACACACGGAAACGGCATTTGACTTCTGAGGATGGTGCAGCTCTACATGCCTCATTGTTGAAGATTAAAAGTCCAAAGAATTTGCCGCCTAATGGAAATAAAAATGAAGAGGAGGAGGGTCAGGCTGTATCAGATTCTGATGTTGACACCATTGTTGGAGTTGGAGATAGCTCCAAGATGGAGGAAATGGAACCTCCAAGCACCCTTCAGTGCGAACTTCGCCCTTATCAAAAGCAGGCACTTCACTGGATGGTCCATTTGGAGAGGGGCCAGACCATGGACGAGGCTGCAACTACCCTGCACCCATGTTGGGAAGCATATCACCTTGCTGACAAGAGGGATCTTGCTATCTACTTGAATTCATTTTCTGGTGAAGCCACGACAGAATTTCCAAGTACTCTTCAAATGGCAAGAGGAGGGATTTTGGCTGATGCTATGGGGCTTGGGAAGACTGTCATGACCATATCTCTCCTCCTTGCAAATTCAGAGAGAGCTAGATCACCTTCTAGTCAGTTGGCTAGCCAATCATCTGGAGAGAGTACTGAGCTCTGTGAAGCCATTGATGCCTCTCCAGATCCTCCTAAGAAGGTTGTAAAGTTTCAGGGATTTGATAAGCTATCAAGGCAAGAGAGTGTTCTCAGAGATGGTGGCAGTCTAATTGTTTGTCCTATGACACTCTTGAGTCAGTGGAAGACAGAGATTGAAACTCATGCTCAACCTGGTTGCCTATCTGTTTATGTTCATTATGGACAGAGCAGATCAAGGGATGCTGAACTTTTAGCTCAAAATGATGTTGTCCTCACTACCTATGGGCTGTTGACTTCAGAATTTACGTCTGAGAGTACCGAAGATCGTGGCGCTCTCTATTCTATACGGTGGTCAAGAGTTGTGCTTGATGAGGCACATACAATTAAGAACTCTAAAAGCCAAATTTCTATGGCTGCAGCTGCCTTGACAGCTGATCGTAGATGGTGTCTCACTGGCACTCCTATTCAGAACAATCTTGAGGACATATTCAGTCTTCTTCGGTTTCTGAAGGTGGAGCCATGGGGAAATTGGGCATGGTGGAATAAACTCATTCAAAAGCCATTTGAAGAGGGTGATGAAAGAGGGTTGAAATTAGTGCAGTCCATTCTGAGACCGATAATGTTAAGAAGAACAAAGTATAGTGTTGACCGTGAAGGAAGGCCAATTTTAGTCCTTCCTCCAGCAAATGTTCAGGTGATTTACTGTGAGCTAACTGAAGCTGAAAAGGACTTCTACGAGGCTTTGTTTAAAAAATCTAAGGTGAAGTTTGATCAATTTGTTGAGCAAGGAAGAGTTCTGCATAATTATGCTTCTATATTGGAATTACTGTTACGACTGCGGCAATGTTGTGACCATCCGTTTCTTGTCATGAGTCGAGGTGATACAAAAGATTTTTCTGACCTGGATAAGCTTGCAAAACGTTTTCTGAGAGGTGGCCGTAGAGCTATTGAAGGTGAAGACAATGTTGTGCCATCAAAAGCATATATTCAGGAGGTTGTTGAAGAGCTACGGAAAGGGGAGCAGGGAGAATGCCCGATATGTCTTGAAGCTTTTGAAGATGCAGTATTGACTCCTTGTGCTCACCGCTTATGCCGAGAGTGTCTGTTGGCAAGTTGGCGAAATGCTGCTTCTGGTTTATGTCCTGTTTGCAGGAAAATAATAAGCAGGCAAGAACTCATCACAGCTCCAACTGAGAACAGATTTCAGATTGATGTTGAGAAAAATTGGGTTGAGTCAACTAAAGTCTCGTCATTATTACGTGAACTTGAAGATCTGCGTTCATCAGGATCGAAGAGCATCATCTTTAGCCAGTGGACTGCCTTTTTGGACCTATTACAGATACCACTTACACAGAATAACATATCTTTTCTTCGTCTTGATGGAACTCTAAGTCAACAGCAACGTGAGAGAGTAATAAAGAACTTTTCTGAGGATAACAATATTTCGGTTTTGTTGATGTCCTTGAAAGCTGGTGGAGTGGGAATAAACCTAACAGCTGCTTCCAATGCATTTGTTGTAGATCCATGGTGGAACCCAGCGGTAGAGGAGCAAGCAGTCATGCGAATTCATCGCATCGGCCAAACTAAACCTGTTTCTATAAAAAGATTCATCGTCAAGGGAACAGTAGAGGAAAGAATGGAGGTAGTGCAGGCAAGAAAGCAAAGGATGATCTCTGGTGCCTTGACTGATCAAGAAGTTCGAAGTGCACGTATAGAGGAGTTGAAGATGCTTTTCACGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_33689.p1 GENE.R_Transcript_33689~~R_Transcript_33689.p1 ORF type:complete len:1039 (+),score=211.39,SNF2_N|PF00176.19|3.4e+03,SNF2_N|PF00176.19|7.2e-89,HIRAN|PF08797.7|1.1e-16,HIRAN|PF08797.7|1.4e+04,Helicase_C|PF00271.27|1.5e-15,zf-C3HC4_3|PF13920.2|4.1e-10,zf-C3HC4|PF00097.21|2.1e-09,zf-RING_2|PF13639.2|4.5e-09,zf-C3HC4_2|PF13923.2|1.4e-07,zf-RING_5|PF14634.2|2.4e-06,zf-C3HC4_4|PF15227.2|8.7e-06,zf-RING_UBOX|PF13445.2|9.4e-06,zf-RING_UBOX|PF13445.2|1.7e+03 R_Transcript_33689:229-3345(+)
MMSNTKVKDEAISTVRSIVGQDYTEMDILRALHMANNDATGAINIIFDTPNFISKPPSRQNARIGNLSRKIEAPSTELFCIEESDNCDSITKHEVLTGNGDQRREKEDSVTVSGSEWWFVGYGEISGMSTCKGRRIKTGDKVEFAFPKNNRLSSPSPGRVFGRGKQVGVCSEIVRFSTKAGEEVGRIPNEWARCLVPLVRDKKIKIEGFCKYAPETLSIMDTIALNVSVYINSALFRKHHQNSLKANANSNSNEESVIHPLPTLFKLLGIVPFQKAEFTPDNLYTRKRHLTSEDGAALHASLLKIKSPKNLPPNGNKNEEEEGQAVSDSDVDTIVGVGDSSKMEEMEPPSTLQCELRPYQKQALHWMVHLERGQTMDEAATTLHPCWEAYHLADKRDLAIYLNSFSGEATTEFPSTLQMARGGILADAMGLGKTVMTISLLLANSERARSPSSQLASQSSGESTELCEAIDASPDPPKKVVKFQGFDKLSRQESVLRDGGSLIVCPMTLLSQWKTEIETHAQPGCLSVYVHYGQSRSRDAELLAQNDVVLTTYGLLTSEFTSESTEDRGALYSIRWSRVVLDEAHTIKNSKSQISMAAAALTADRRWCLTGTPIQNNLEDIFSLLRFLKVEPWGNWAWWNKLIQKPFEEGDERGLKLVQSILRPIMLRRTKYSVDREGRPILVLPPANVQVIYCELTEAEKDFYEALFKKSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTKDFSDLDKLAKRFLRGGRRAIEGEDNVVPSKAYIQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNAASGLCPVCRKIISRQELITAPTENRFQIDVEKNWVESTKVSSLLRELEDLRSSGSKSIIFSQWTAFLDLLQIPLTQNNISFLRLDGTLSQQQRERVIKNFSEDNNISVLLMSLKAGGVGINLTAASNAFVVDPWWNPAVEEQAVMRIHRIGQTKPVSIKRFIVKGTVEERMEVVQARKQRMISGALTDQEVRSARIEELKMLFT*

Click here to download the sequence:
Link to NCBI Protein BLAST