Transcript Information: R_Transcript_336895.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value3E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.26453566601042
Replicate 20.30429420893186
Replicate 30.4979725564381
Condition 2: 8 Hour
Replicate 10.35486760793109
Replicate 20
Replicate 30.13153341029266
Condition 3: 24 Hour
Replicate 10.16636092193988
Replicate 20.47946214979516
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_336895.p1 GENE.R_Transcript_336895~~R_Transcript_336895.p1 ORF type:5prime_partial len:138 (+),score=-5.38,DDE_Tnp_4|PF13359.2|1.4e-14,Plant_tran|PF04827.10|2.4e-09 R_Transcript_336895:2-415(+)
AATGACCTAAGAGTTCCTCGTGGTAAGATAGTATGTGGAATTAGAAAAAGTAGTTTATTCGTTTCTCTATTTTTTTTATCATTTTTTGACTCCATTATTAAAAAGAACATAATAAGAGAGCATATATTCATAATAGGTTGTTATTACCTTGTTGACACTGGCTACAAGAATTATGAAGGTTTTTTTGCACCATATAGAGGCCAATGTTATCATCTAGAAGAATGGTTTAATCCTCTAACTAAAAAAGAAGAGCTCTTTAATATGATACATTCATCGGCAAGAAACGTCATTGAAAGGACTTTTGGTTTGTTGAAGTTGCGTTGGGGTATACTTAAGCATCCATCTCATTACCATGTCAATACACATATCGATATCATCCTATCTTCTTGTTATATCCACAATCTTATTCGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_336895.p1 GENE.R_Transcript_336895~~R_Transcript_336895.p1 ORF type:5prime_partial len:138 (+),score=-5.38,DDE_Tnp_4|PF13359.2|1.4e-14,Plant_tran|PF04827.10|2.4e-09 R_Transcript_336895:2-415(+)
NDLRVPRGKIVCGIRKSSLFVSLFFLSFFDSIIKKNIIREHIFIIGCYYLVDTGYKNYEGFFAPYRGQCYHLEEWFNPLTKKEELFNMIHSSARNVIERTFGLLKLRWGILKHPSHYHVNTHIDIILSSCYIHNLIR*

Click here to download the sequence:
Link to NCBI Protein BLAST